Os02g0822500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Junctophilin-2 (Junctophilin type 2) (JP-2).
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Os02g0822500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Junctophilin-2 (Junctophilin type 2) (JP-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.79 | 0.252 | 10.4 | -0.226 | 1.2 | -1.3 | -0.301 | 1.05 | 0.199 | 11.8 | 13.13 | 643 | -- | -- |
| 29.98 | 0.255 | 10.4 | -0.336 | 1.24 | -1.22 | -0.353 | -- | 0.186 | 11.8 | 14.87 | 596 | -- | -- |
| 29.15 | 0.251 | 10.4 | -0.203 | 1.2 | -1.3 | -- | 1.26 | 0.206 | 11.8 | 12.72 | 644 | -- | -- |
| 30.24 | 0.256 | 10.4 | -0.433 | 1.28 | -1.32 | -- | -- | 0.149 | 12 | 13.93 | 520 | -- | -- |
| 103.47 | 0.474 | 10.4 | 0.201 | -- | -1.86 | -- | 1.99 | 0.362 | -- | 17.01 | 843 | -- | -- |
| 49.68 | 0.33 | 10.5 | -0.721 | 1.39 | -- | -0.364 | -- | -0.0462 | 11.1 | -- | -- | -- | -- |
| 50.24 | 0.332 | 10.5 | -0.736 | 1.4 | -- | -- | -- | -0.0476 | 11 | -- | -- | -- | -- |
| 105.09 | 0.477 | 10.4 | -0.227 | -- | -2.02 | -- | -- | 0.266 | -- | 14.9 | 830 | -- | -- |
| 34.63 | 0.274 | 10.4 | -- | 1.24 | -1.49 | -- | -- | 0.2 | 12.1 | 9.425 | 584 | -- | -- |
| 171.73 | 0.612 | 10.5 | -0.768 | -- | -- | -- | -- | -0.0585 | -- | -- | -- | -- | -- |
| 64.52 | 0.376 | 10.4 | -- | 1.4 | -- | -- | -- | 0.0344 | 11.1 | -- | -- | -- | -- |
| 106.26 | 0.48 | 10.4 | -- | -- | -2.11 | -- | -- | 0.298 | -- | 14.8 | 831 | -- | -- |
| 187.28 | 0.639 | 10.5 | -- | -- | -- | -- | -- | 0.0267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 2 | 26.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 12 | 27.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 21 |
| 16 | 27.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 68 | 28.09 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 91 | 28.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 111 | 28.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 125 | 28.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 137 | 28.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 148 | 28.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 189 | 28.97 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 298 | 29.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 339 | 29.44 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 350 | 29.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 361 | 29.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 374 | 29.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 553 | 29.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 598 | 29.92 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 623 | 29.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 649 | 29.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 726 | 30.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 814 | 30.12 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 985 | 30.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 990 | 30.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |