Os02g0821500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os02g0821500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 175.23 | 0.622 | 5.98 | 0.472 | 0.346 | 1.77 | 1.01 | 0.698 | -0.333 | 6.22 | 22.3 | 1205 | -- | -- |
| 175.97 | 0.618 | 5.96 | 0.692 | 0.271 | 1.72 | 0.915 | -- | -0.305 | 5.71 | 22.1 | 991 | -- | -- |
| 175.15 | 0.616 | 5.99 | 0.436 | 0.286 | 1.77 | -- | 0.827 | -0.357 | 4.04 | 22.2 | 973 | -- | -- |
| 177.05 | 0.62 | 5.97 | 0.699 | 0.283 | 1.76 | -- | -- | -0.298 | 3.93 | 22.17 | 967 | -- | -- |
| 178.97 | 0.623 | 6.01 | 0.421 | -- | 1.78 | -- | 0.873 | -0.368 | -- | 22.1 | 882 | -- | -- |
| 299.27 | 0.811 | 6.09 | 0.0666 | 0.343 | -- | 1.03 | -- | -0.877 | 7.73 | -- | -- | -- | -- |
| 302.3 | 0.814 | 6.09 | 0.0934 | 0.343 | -- | -- | -- | -0.878 | 7.87 | -- | -- | -- | -- |
| 180.63 | 0.626 | 5.97 | 0.667 | -- | 1.7 | -- | -- | -0.316 | -- | 22.13 | 840 | -- | -- |
| 188.19 | 0.639 | 5.99 | -- | 0.27 | 1.58 | -- | -- | -0.401 | 4.01 | 22.2 | 920 | -- | -- |
| 308.68 | 0.821 | 6.1 | 0.0973 | -- | -- | -- | -- | -0.873 | -- | -- | -- | -- | -- |
| 302.53 | 0.814 | 6.09 | -- | 0.343 | -- | -- | -- | -0.888 | 7.85 | -- | -- | -- | -- |
| 191.41 | 0.644 | 6 | -- | -- | 1.53 | -- | -- | -0.423 | -- | 22.2 | 766 | -- | -- |
| 308.93 | 0.82 | 6.1 | -- | -- | -- | -- | -- | -0.884 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 6 | 183.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 9 | 184.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 11 | 184.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 16 | 184.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 31 | 185.27 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 38 | 185.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 43 | 185.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 83 | 186.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 133 | 187.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 140 | 187.74 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 150 | 187.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 151 | 187.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 163 | 188.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 164 | 188.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 187 | 188.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 188 | 188.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 195 | 188.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 210 | 188.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 230 | 188.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 248 | 188.92 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 474 | 190.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 658 | 191.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 743 | 192.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 870 | 193.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 895 | 193.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 998 | 193.87 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |