Os02g0821400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0821400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.24 | 0.397 | 11.1 | 0.984 | 1.95 | 0.881 | 0.576 | -0.76 | 1.08 | 23.8 | 47.82 | 1387 | -- | -- |
| 72.37 | 0.396 | 11.1 | 0.873 | 1.96 | 0.845 | 0.65 | -- | 1.04 | 23.8 | 153.7 | 1374 | -- | -- |
| 72.5 | 0.397 | 11.1 | 0.974 | 1.97 | 0.881 | -- | -0.919 | 1.08 | 23.8 | 45.6 | 1361 | -- | -- |
| 74.08 | 0.401 | 11.1 | 0.857 | 1.99 | 0.848 | -- | -- | 1.05 | 23.8 | 47.47 | 1364 | -- | -- |
| 131.32 | 0.537 | 11.1 | 0.817 | -- | 1.94 | -- | 0.355 | 0.835 | -- | 45.6 | 1361 | -- | -- |
| 97.95 | 0.464 | 11.1 | 0.742 | 1.85 | -- | 0.502 | -- | 0.828 | 23.8 | -- | -- | -- | -- |
| 99.04 | 0.466 | 11.1 | 0.721 | 1.84 | -- | -- | -- | 0.826 | 23.8 | -- | -- | -- | -- |
| 123.18 | 0.517 | 11.1 | 0.722 | -- | 2.46 | -- | -- | 0.895 | -- | 114.3 | 49 | -- | -- |
| 93.32 | 0.45 | 11.1 | -- | 1.9 | 0.799 | -- | -- | 0.959 | 23.9 | 234.1 | 1399 | -- | -- |
| 312.85 | 0.826 | 11.1 | 0.775 | -- | -- | -- | -- | 0.849 | -- | -- | -- | -- | -- |
| 112.76 | 0.497 | 11.1 | -- | 1.85 | -- | -- | -- | 0.746 | 23.8 | -- | -- | -- | -- |
| 136.91 | 0.545 | 11.1 | -- | -- | 2.48 | -- | -- | 0.82 | -- | 131.8 | 51 | -- | -- |
| 328.7 | 0.846 | 11.1 | -- | -- | -- | -- | -- | 0.763 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.54 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 2 | 68.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 5 | 69.19 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 8 | 69.37 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 11 | 69.47 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 28 | 69.81 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 35 | 69.84 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 41 | 69.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 43 | 69.94 | radiation | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 56 | 70.05 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 19 |
| 58 | 70.06 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 61 | 70.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 64 | 70.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 81 | 70.26 | radiation | 40 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 89 | 70.29 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 93 | 70.31 | radiation | 40 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 98 | 70.32 | radiation | 40 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 105 | 70.34 | radiation | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 107 | 70.34 | radiation | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 117 | 70.36 | radiation | 30 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 130 | 70.39 | radiation | 30 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 131 | 70.39 | radiation | 30 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 149 | 70.41 | radiation | 30 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 166 | 70.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 177 | 70.53 | radiation | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 185 | 70.55 | radiation | 40 | 1440 | < th | dose dependent | sin | 5 | NA |
| 197 | 70.62 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 228 | 70.72 | humidity | 80 | 1440 | < th | dose dependent | sin | 4 | NA |
| 233 | 70.74 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 503 | 71.29 | radiation | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 565 | 71.39 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 566 | 71.39 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 18 |
| 573 | 71.40 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 578 | 71.41 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 590 | 71.42 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 608 | 71.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 613 | 71.45 | radiation | 40 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 627 | 71.46 | radiation | 40 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 634 | 71.47 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 650 | 71.48 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |
| 670 | 71.48 | radiation | 40 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 736 | 71.54 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 814 | 71.60 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 869 | 71.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 948 | 71.75 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 949 | 71.75 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 23 |