Os02g0820900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ethylene receptor.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0820900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ethylene receptor.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.67 | 0.344 | 11.1 | 0.968 | 0.313 | -0.979 | 0.87 | 1.65 | -0.0448 | 23 | 26.6 | 1425 | -- | -- |
| 54.53 | 0.344 | 11.2 | 0.561 | 0.284 | -0.794 | 0.851 | -- | -0.125 | 23.3 | 26.56 | 1440 | -- | -- |
| 55.62 | 0.347 | 11.2 | 0.849 | 0.36 | -1.12 | -- | 1.62 | -0.0616 | 20.7 | 26.59 | 1713 | -- | -- |
| 56.55 | 0.35 | 11.2 | 0.501 | 0.349 | -0.955 | -- | -- | -0.125 | 21 | 26.5 | 1709 | -- | -- |
| 62.02 | 0.367 | 11.1 | 0.956 | -- | -1.07 | -- | 1.89 | -0.0259 | -- | 26.49 | 1560 | -- | -- |
| 85.05 | 0.432 | 11.2 | 0.251 | 0.274 | -- | 0.753 | -- | -0.159 | 22.3 | -- | -- | -- | -- |
| 87.04 | 0.437 | 11.2 | 0.224 | 0.285 | -- | -- | -- | -0.159 | 21.3 | -- | -- | -- | -- |
| 62.82 | 0.369 | 11.2 | 0.499 | -- | -0.869 | -- | -- | -0.129 | -- | 26.5 | 1563 | -- | -- |
| 62.67 | 0.369 | 11.2 | -- | 0.342 | -0.855 | -- | -- | -0.208 | 21.2 | 27.1 | 1714 | -- | -- |
| 91.78 | 0.448 | 11.2 | 0.226 | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
| 88.36 | 0.44 | 11.2 | -- | 0.286 | -- | -- | -- | -0.184 | 21.3 | -- | -- | -- | -- |
| 68.91 | 0.387 | 11.2 | -- | -- | -0.778 | -- | -- | -0.194 | -- | 26.76 | 1575 | -- | -- |
| 93.12 | 0.45 | 11.2 | -- | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 41 | 54.24 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 57 | 54.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 76 | 54.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 232 | 55.04 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 262 | 55.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 301 | 55.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 308 | 55.77 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 309 | 55.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 318 | 55.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 333 | 56.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 339 | 56.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 353 | 56.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 361 | 56.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 362 | 56.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 390 | 56.22 | temperature | 30 | 1440 | < th | dose independent | sin | 0 | NA |
| 405 | 56.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 411 | 56.23 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 425 | 56.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 428 | 56.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 436 | 56.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 499 | 56.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 511 | 56.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 581 | 56.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 611 | 56.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 767 | 56.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 781 | 56.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 783 | 56.64 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 787 | 56.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 879 | 56.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 905 | 56.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 907 | 56.67 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 935 | 56.71 | temperature | 30 | 1440 | > th | dose independent | sin | 0 | NA |
| 936 | 56.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 955 | 56.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 961 | 56.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 966 | 56.73 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 976 | 56.73 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 992 | 56.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 993 | 56.76 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 994 | 56.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |