Os02g0820000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16).
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Os02g0820000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.84 | 0.209 | 12.8 | -0.568 | 1.1 | 0.477 | -0.275 | -1.09 | -0.0359 | 16.1 | 16.58 | 4471 | -- | -- |
| 20.91 | 0.213 | 12.8 | -0.288 | 1.12 | 0.496 | -0.3 | -- | 0.0268 | 16.1 | 15.68 | 4364 | -- | -- |
| 20 | 0.208 | 12.8 | -0.6 | 1.1 | 0.472 | -- | -1.2 | -0.048 | 16.2 | 17.94 | 4506 | -- | -- |
| 21 | 0.213 | 12.8 | -0.31 | 1.1 | 0.531 | -- | -- | 0.0382 | 16.2 | 14.78 | 4435 | -- | -- |
| 58.01 | 0.357 | 12.8 | -0.566 | -- | 1.26 | -- | -1.34 | -0.141 | -- | 18.53 | 14841 | -- | -- |
| 26.14 | 0.24 | 12.7 | -0.0562 | 1.09 | -- | -0.255 | -- | 0.143 | 16.2 | -- | -- | -- | -- |
| 26.32 | 0.24 | 12.7 | -0.0591 | 1.09 | -- | -- | -- | 0.142 | 16.2 | -- | -- | -- | -- |
| 59.97 | 0.362 | 12.8 | -0.343 | -- | 1.2 | -- | -- | -0.0772 | -- | 18.53 | 14841 | -- | -- |
| 22.93 | 0.223 | 12.8 | -- | 1.11 | 0.367 | -- | -- | 0.0874 | 16.1 | 16.04 | 4343 | -- | -- |
| 90.53 | 0.445 | 12.7 | -0.103 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 26.41 | 0.24 | 12.7 | -- | 1.09 | -- | -- | -- | 0.149 | 16.2 | -- | -- | -- | -- |
| 58.99 | 0.358 | 12.8 | -- | -- | 1.12 | -- | -- | -0.0335 | -- | 20.59 | 151 | -- | -- |
| 90.81 | 0.445 | 12.7 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 5 | 17.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 9 | 18.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 16 | 18.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 18 | 18.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 22 | 18.54 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 18 |
| 32 | 18.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 47 | 18.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 50 | 18.92 | radiation | 1 | 720 | < th | dose dependent | sin | 12 | NA |
| 56 | 18.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 59 | 18.98 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 20 |
| 63 | 19.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 64 | 19.02 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 65 | 19.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 69 | 19.08 | radiation | 40 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 80 | 19.12 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 86 | 19.13 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 91 | 19.14 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 99 | 19.16 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 108 | 19.17 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 157 | 19.21 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 169 | 19.21 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 174 | 19.22 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 229 | 19.26 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 241 | 19.26 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 282 | 19.29 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 23 | NA |
| 283 | 19.29 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 23 | NA |
| 311 | 19.30 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 327 | 19.32 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 383 | 19.34 | radiation | 30 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 443 | 19.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 444 | 19.35 | radiation | 30 | 43200 | < th | dose independent | sin | 8 | NA |
| 446 | 19.35 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 483 | 19.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 485 | 19.36 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 547 | 19.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 579 | 19.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 589 | 19.39 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 614 | 19.40 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 615 | 19.40 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 630 | 19.40 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 647 | 19.41 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 699 | 19.42 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 742 | 19.42 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 749 | 19.42 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 20 |
| 751 | 19.42 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 21 |
| 752 | 19.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 757 | 19.43 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 7 | NA |
| 775 | 19.43 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 807 | 19.43 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 822 | 19.43 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 832 | 19.43 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 855 | 19.43 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 867 | 19.43 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 875 | 19.44 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 4 | NA |
| 877 | 19.44 | atmosphere | 1010 | 43200 | > th | dose independent | no | NA | NA |
| 878 | 19.44 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 9 | NA |
| 915 | 19.44 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 927 | 19.44 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 936 | 19.44 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 940 | 19.44 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 983 | 19.44 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 18 |