Os02g0819900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os02g0819900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.52 | 0.359 | 8.06 | 2.29 | 0.355 | -1.31 | 0.0223 | 3.55 | 0.2 | 18.2 | 24.5 | 1559 | -- | -- |
| 61.89 | 0.369 | 8.15 | 1.27 | 0.838 | -1.55 | 0.34 | -- | 0.0528 | 15.6 | 21.21 | 3028 | -- | -- |
| 58.51 | 0.356 | 8.06 | 2.28 | 0.357 | -1.31 | -- | 3.48 | 0.204 | 18.1 | 24.39 | 1564 | -- | -- |
| 62.24 | 0.37 | 8.15 | 1.28 | 0.833 | -1.54 | -- | -- | 0.0522 | 15.6 | 21.21 | 3028 | -- | -- |
| 63.74 | 0.372 | 8.05 | 2.22 | -- | -1.24 | -- | 3.14 | 0.223 | -- | 23.84 | 1446 | -- | -- |
| 99.13 | 0.467 | 8.21 | 0.961 | 0.325 | -- | 0.0901 | -- | -0.205 | 17.8 | -- | -- | -- | -- |
| 99.15 | 0.466 | 8.21 | 0.96 | 0.325 | -- | -- | -- | -0.205 | 17.8 | -- | -- | -- | -- |
| 69.24 | 0.388 | 8.13 | 1.48 | -- | -1.01 | -- | -- | 0.128 | -- | 20.9 | 7165 | -- | -- |
| 101.71 | 0.472 | 8.2 | -- | 0.674 | -1.13 | -- | -- | -0.157 | 16 | 22.2 | 1520 | -- | -- |
| 104.65 | 0.478 | 8.2 | 0.95 | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
| 123.45 | 0.52 | 8.23 | -- | 0.311 | -- | -- | -- | -0.312 | 17.9 | -- | -- | -- | -- |
| 108.26 | 0.485 | 8.2 | -- | -- | -0.706 | -- | -- | -0.184 | -- | 22.19 | 1410 | -- | -- |
| 128.46 | 0.529 | 8.23 | -- | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 2 | 58.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 17 | 59.15 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 22 | 59.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 70 | 59.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 17 |
| 134 | 59.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 160 | 59.66 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 183 | 59.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 195 | 59.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 288 | 60.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 289 | 60.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 306 | 60.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 309 | 60.72 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 469 | 61.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 486 | 61.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 621 | 61.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 20 |
| 641 | 62.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 664 | 62.13 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 703 | 62.32 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 714 | 62.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 782 | 62.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 787 | 62.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 802 | 62.72 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 844 | 62.89 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 848 | 62.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 856 | 62.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 869 | 63.03 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 878 | 63.08 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 881 | 63.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 896 | 63.16 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 913 | 63.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 974 | 63.42 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 999 | 63.50 | temperature | 20 | 90 | > th | dose dependent | sin | 22 | NA |