Os02g0819600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os02g0819600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.55 | 0.295 | 12 | 0.615 | 0.707 | 0.764 | -0.0827 | -0.729 | 0.317 | 21.3 | 20 | 2771 | -- | -- |
| 39.9 | 0.294 | 12 | 0.73 | 0.714 | 0.957 | -0.11 | -- | 0.344 | 21.3 | 19.6 | 2788 | -- | -- |
| 39.57 | 0.293 | 12 | 0.618 | 0.706 | 0.761 | -- | -0.737 | 0.317 | 21.3 | 20 | 2749 | -- | -- |
| 39.87 | 0.294 | 12 | 0.708 | 0.702 | 0.957 | -- | -- | 0.352 | 21.5 | 19.67 | 3192 | -- | -- |
| 62.76 | 0.369 | 12 | 0.801 | -- | 0.751 | -- | -0.5 | 0.307 | -- | 21.29 | 748 | -- | -- |
| 56.22 | 0.352 | 12 | 1.22 | 0.713 | -- | -0.0724 | -- | 0.569 | 21.6 | -- | -- | -- | -- |
| 56.24 | 0.351 | 12 | 1.22 | 0.713 | -- | -- | -- | 0.569 | 21.5 | -- | -- | -- | -- |
| 63.51 | 0.371 | 12 | 0.941 | -- | 0.788 | -- | -- | 0.354 | -- | 21.4 | 750 | -- | -- |
| 41.55 | 0.3 | 12.1 | -- | 0.703 | 1.33 | -- | -- | 0.19 | 21.5 | 17.81 | 22483 | -- | -- |
| 86.25 | 0.434 | 12 | 1.23 | -- | -- | -- | -- | 0.567 | -- | -- | -- | -- | -- |
| 95.47 | 0.457 | 12 | -- | 0.716 | -- | -- | -- | 0.433 | 21.7 | -- | -- | -- | -- |
| 70.15 | 0.39 | 12 | -- | -- | 1.32 | -- | -- | 0.198 | -- | 17.9 | 22473 | -- | -- |
| 125.85 | 0.524 | 12 | -- | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 2 | 39.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 6 | 39.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 7 | 40.00 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 8 | 40.06 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 10 | 40.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 11 | 40.11 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 15 | 40.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 18 | 40.25 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 19 | 40.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 26 | 40.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 27 | 40.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 29 | 40.33 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 31 | 40.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 36 | 40.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 37 | 40.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 43 | 40.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 52 | 40.40 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 61 | 40.42 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 64 | 40.43 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 65 | 40.44 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 94 | 40.50 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 95 | 40.50 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 113 | 40.53 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 115 | 40.53 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 120 | 40.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 129 | 40.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 130 | 40.55 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 131 | 40.55 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 133 | 40.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 163 | 40.58 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 198 | 40.61 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 217 | 40.63 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 14 | NA |
| 239 | 40.64 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 240 | 40.64 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 251 | 40.65 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 273 | 40.66 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 290 | 40.67 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 15 | NA |
| 291 | 40.67 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 306 | 40.67 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 308 | 40.67 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 322 | 40.68 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 356 | 40.69 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 384 | 40.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 20 |
| 407 | 40.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 18 |
| 449 | 40.73 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 465 | 40.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 19 |
| 483 | 40.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 499 | 40.76 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 545 | 40.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 20 |
| 548 | 40.79 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 569 | 40.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 20 |
| 580 | 40.80 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 592 | 40.80 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 601 | 40.80 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 602 | 40.80 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 648 | 40.82 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 674 | 40.84 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 677 | 40.85 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 803 | 40.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 812 | 40.89 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 845 | 40.89 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 849 | 40.89 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 12 | NA |
| 881 | 40.90 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 904 | 40.91 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 913 | 40.92 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 932 | 40.92 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 9 |
| 956 | 40.93 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 22 |