Os02g0816100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD-superfamily hydrolase, subfamily IA, variant 2 protein.
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Os02g0816100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD-superfamily hydrolase, subfamily IA, variant 2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.22 | 0.267 | 12.3 | -0.998 | 1.24 | -0.56 | 0.635 | -0.221 | -0.435 | 8.93 | 71 | 1353 | -- | -- |
| 32.34 | 0.265 | 12.3 | -1.02 | 1.25 | -0.562 | 0.631 | -- | -0.438 | 8.93 | 71 | 1351 | -- | -- |
| 33.59 | 0.27 | 12.3 | -0.981 | 1.24 | -0.554 | -- | -0.193 | -0.435 | 8.94 | 71.05 | 1354 | -- | -- |
| 33.67 | 0.27 | 12.3 | -1.01 | 1.24 | -0.567 | -- | -- | -0.445 | 8.94 | 71.17 | 1352 | -- | -- |
| 117.51 | 0.505 | 12.3 | -1.01 | -- | -0.625 | -- | -0.125 | -0.436 | -- | 74 | 1465 | -- | -- |
| 44.6 | 0.313 | 12.2 | -0.917 | 1.23 | -- | 0.575 | -- | -0.358 | 8.73 | -- | -- | -- | -- |
| 45.7 | 0.317 | 12.2 | -0.897 | 1.23 | -- | -- | -- | -0.358 | 8.75 | -- | -- | -- | -- |
| 117.61 | 0.505 | 12.3 | -1 | -- | -0.632 | -- | -- | -0.426 | -- | 73.96 | 1463 | -- | -- |
| 56.22 | 0.349 | 12.3 | -- | 1.3 | -0.693 | -- | -- | -0.527 | 8.89 | 74.02 | 8103 | -- | -- |
| 131.45 | 0.536 | 12.3 | -0.896 | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
| 66.92 | 0.383 | 12.2 | -- | 1.23 | -- | -- | -- | -0.258 | 8.81 | -- | -- | -- | -- |
| 137.11 | 0.545 | 12.2 | -- | -- | -0.816 | -- | -- | -0.227 | -- | 65.88 | 47520 | -- | -- |
| 152.6 | 0.577 | 12.3 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 5 | 30.44 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 27 | 31.10 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 28 | 31.10 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 32 | 31.13 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 34 | 31.16 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 40 | 31.21 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 42 | 31.25 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 74 | 31.46 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 99 | 31.67 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 118 | 31.75 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 140 | 31.83 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 161 | 31.90 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 303 | 32.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 321 | 32.26 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 322 | 32.26 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 446 | 32.43 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 452 | 32.44 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 453 | 32.44 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 459 | 32.44 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 462 | 32.44 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 470 | 32.45 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 520 | 32.49 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 570 | 32.57 | humidity | 70.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 605 | 32.61 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 23 | NA |
| 608 | 32.61 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 629 | 32.63 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 655 | 32.66 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 23 | NA |
| 658 | 32.66 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 23 | NA |
| 714 | 32.70 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 715 | 32.70 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 7 |
| 771 | 32.70 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 7 |