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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0816000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0259) R2 : 4.07e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00235 (0.0546) R2dN8 : 5.25e-06 R2N8 : 4.07e-06
σ : 0.489
deviance : 109.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.92 0.46 2.95 0.167 0.274 0.458 0.394 1.03 0.0575 20.8 49 840 -- --
96.26 0.457 2.96 0.132 0.271 0.772 0.438 -- 0.0662 20.8 48.39 851 -- --
96.39 0.457 2.95 0.158 0.276 0.485 -- 1.13 0.0596 20.5 48.8 840 -- --
96.82 0.458 2.96 0.115 0.271 0.834 -- -- 0.0697 20.3 48.19 840 -- --
100.49 0.467 2.94 0.134 -- 0.585 -- 1.1 0.0612 -- 48.54 840 -- --
100.96 0.471 2.97 0.262 0.313 -- 0.664 -- 0.0311 21.1 -- -- -- --
102.45 0.474 2.97 0.24 0.315 -- -- -- 0.0314 20.7 -- -- -- --
100.87 0.468 2.95 0.0973 -- 0.932 -- -- 0.0698 -- 48.63 836 -- --
97.14 0.459 2.96 -- 0.276 0.886 -- -- 0.0628 20.3 48.22 840 -- --
108.08 0.486 2.96 0.239 -- -- -- -- 0.0289 -- -- -- -- --
103.96 0.477 2.97 -- 0.315 -- -- -- 0.00472 20.8 -- -- -- --
101.1 0.468 2.95 -- -- 0.976 -- -- 0.0617 -- 48.3 836 -- --
109.59 0.489 2.96 -- -- -- -- -- 0.00235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.74 humidity 90 90 > th dose dependent rect. 18 1
2 91.94 temperature 20 10 < th dose independent rect. 19 1
6 91.98 temperature 20 10 < th dose dependent rect. 20 1
8 91.99 humidity 90 90 > th dose independent rect. 18 1
30 92.96 temperature 25 90 > th dose independent rect. 18 2
32 93.09 wind 1 720 < th dose independent rect. 15 2
35 93.16 humidity 80 720 < th dose dependent rect. 14 1
39 93.32 temperature 20 90 > th dose dependent rect. 18 2
47 93.56 wind 1 720 < th dose dependent rect. 14 3
48 93.57 radiation 1 270 > th dose dependent rect. 18 1
60 93.63 temperature 25 270 < th dose dependent rect. 15 5
62 93.70 temperature 25 270 < th dose dependent rect. 16 3
66 93.76 humidity 90 270 > th dose dependent rect. 11 9
76 93.93 wind 1 720 < th dose independent rect. 14 7
80 93.95 humidity 90 270 > th dose independent rect. 11 9
92 94.14 wind 3 14400 < th dose independent rect. 20 1
95 94.17 wind 1 720 < th dose dependent rect. 14 7
96 94.18 humidity 90 270 > th dose independent rect. 15 4
99 94.22 wind 3 14400 > th dose independent rect. 20 1
100 94.22 humidity 90 270 > th dose dependent rect. 15 5
123 94.35 humidity 90 30 > th dose dependent rect. 15 5
128 94.37 wind 5 43200 < th dose dependent rect. 20 2
134 94.41 temperature 20 10 < th dose dependent rect. 12 9
141 94.47 temperature 20 10 < th dose dependent rect. 16 5
155 94.56 atmosphere 1005 30 > th dose independent rect. 19 1
178 94.64 humidity 50 720 < th dose independent rect. 15 1
179 94.64 humidity 50 720 < th dose dependent rect. 14 3
192 94.68 humidity 70 90 < th dose independent rect. 18 2
231 94.71 humidity 80 43200 > th dose independent rect. 6 5
235 94.72 humidity 80 43200 < th dose independent rect. 7 4
255 94.80 humidity 80 43200 < th dose independent rect. 6 6
257 94.80 temperature 20 720 > th dose dependent rect. 14 2
259 94.81 temperature 25 270 < th dose dependent rect. 11 9
260 94.82 humidity 80 43200 > th dose independent rect. 7 3
266 94.83 wind 1 43200 > th dose dependent rect. 19 3
277 94.86 radiation 1 43200 < th dose dependent rect. 19 4
279 94.87 humidity 80 43200 > th dose independent rect. 5 7
286 94.88 wind 5 30 < th dose independent rect. 19 1
295 94.90 humidity 90 90 < th dose dependent rect. 18 2
343 95.01 temperature 25 720 > th dose independent rect. 15 1
356 95.03 atmosphere 1010 10 < th dose independent rect. 22 20
360 95.04 humidity 70 90 < th dose dependent rect. 19 1
374 95.05 temperature 25 270 < th dose independent rect. 15 5
382 95.06 humidity 70 43200 > th dose dependent rect. 7 3
394 95.09 radiation 10 30 > th dose independent rect. 17 14
398 95.10 radiation 10 10 > th dose independent rect. 6 1
428 95.10 radiation 10 10 > th dose dependent rect. 6 1
458 95.11 wind 1 10 < th dose dependent rect. 1 1
464 95.12 humidity 70 43200 > th dose dependent rect. 5 6
473 95.14 humidity 80 43200 < th dose independent rect. 8 2
493 95.18 radiation 1 90 < th dose independent rect. 20 22
507 95.20 radiation 10 30 < th dose dependent rect. 20 22
543 95.27 humidity 70 270 > th dose independent rect. 15 13
562 95.30 humidity 90 30 > th dose independent rect. 15 5
565 95.30 atmosphere 1010 10 < th dose independent rect. 20 22
570 95.31 humidity 90 30 < th dose independent rect. 5 15
571 95.31 wind 7 10 < th dose dependent rect. 19 1
603 95.33 humidity 60 43200 > th dose dependent rect. 5 9
612 95.35 wind 1 1440 > th dose independent rect. 16 1
632 95.38 humidity 80 43200 > th dose independent rect. 21 1
670 95.41 wind 1 720 < th dose dependent rect. 11 11
678 95.42 wind 3 14400 > th dose dependent rect. 8 14
690 95.44 humidity 50 720 < th dose dependent sin 13 NA
699 95.45 atmosphere 1005 720 < th dose independent rect. 14 2
745 95.49 humidity 80 43200 < th dose independent rect. 20 3
751 95.49 humidity 50 720 > th dose dependent rect. 11 7
758 95.50 humidity 80 43200 < th dose independent rect. 21 1
778 95.50 wind 9 43200 < th dose dependent rect. 10 13
787 95.51 wind 3 14400 > th dose dependent rect. 7 11
816 95.53 wind 3 14400 > th dose dependent sin 23 NA
829 95.54 humidity 80 43200 > th dose independent rect. 20 4
852 95.55 humidity 50 270 > th dose independent rect. 20 22
892 95.56 wind 9 14400 < th dose dependent rect. 7 15
946 95.59 wind 5 14400 > th dose independent rect. 8 13
947 95.59 wind 5 14400 < th dose independent rect. 8 13
978 95.60 humidity 60 43200 > th dose dependent rect. 10 2
981 95.60 wind 5 14400 > th dose dependent rect. 10 8