Os02g0815900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0815900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.61 | 0.223 | 10.2 | 0.68 | 0.641 | 0.697 | 0.346 | -0.924 | 0.17 | 4.66 | 30.31 | 255 | -- | -- |
| 23.27 | 0.225 | 10.2 | 0.53 | 0.646 | 0.692 | 0.0676 | -- | 0.138 | 4.6 | 29.18 | 263 | -- | -- |
| 22.85 | 0.223 | 10.2 | 0.64 | 0.637 | 0.708 | -- | -0.698 | 0.157 | 4.65 | 30.43 | 236 | -- | -- |
| 23.28 | 0.225 | 10.2 | 0.522 | 0.638 | 0.698 | -- | -- | 0.134 | 4.61 | 29.39 | 263 | -- | -- |
| 37.93 | 0.287 | 10.2 | 0.799 | -- | 1.45 | -- | -0.88 | 0.24 | -- | 36.2 | 231 | -- | -- |
| 29.8 | 0.256 | 10.3 | 0.346 | 0.851 | -- | 0.155 | -- | -0.00826 | 4.57 | -- | -- | -- | -- |
| 29.86 | 0.256 | 10.3 | 0.345 | 0.852 | -- | -- | -- | -0.00908 | 4.56 | -- | -- | -- | -- |
| 38.49 | 0.289 | 10.2 | 0.649 | -- | 1.3 | -- | -- | 0.202 | -- | 32.14 | 221 | -- | -- |
| 29.81 | 0.254 | 10.3 | -- | 0.71 | 0.522 | -- | -- | 0.0141 | 4.55 | 43.11 | 249 | -- | -- |
| 68.56 | 0.387 | 10.3 | 0.378 | -- | -- | -- | -- | 0.0133 | -- | -- | -- | -- | -- |
| 33 | 0.269 | 10.3 | -- | 0.858 | -- | -- | -- | -0.0475 | 4.55 | -- | -- | -- | -- |
| 49.4 | 0.327 | 10.3 | -- | -- | 1.2 | -- | -- | 0.105 | -- | 51.37 | 221 | -- | -- |
| 72.32 | 0.397 | 10.3 | -- | -- | -- | -- | -- | -0.0286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 2 | 20.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 16 | 20.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 21 | 20.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 26 | 21.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 94 | 21.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 105 | 21.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 166 | 22.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 196 | 22.32 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 17 |
| 208 | 22.37 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 17 |
| 213 | 22.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 230 | 22.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 270 | 22.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 8 |
| 287 | 22.62 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 19 |
| 294 | 22.64 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 299 | 22.65 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 301 | 22.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 341 | 22.75 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 407 | 22.85 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 3 |
| 442 | 22.91 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 5 |
| 631 | 23.22 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 763 | 23.41 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 18 |
| 920 | 23.58 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 937 | 23.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 941 | 23.61 | radiation | 1 | 30 | < th | dose dependent | rect. | 16 | 8 |
| 951 | 23.61 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |