FiT-DB / Search/ Help/ Sample detail

Os02g0815600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Diphthamide synthesis DPH2 protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0245) R2 : 0.582
β1 : 0.825 (0.0894) R2dD : 0.0822 R2D : 0.0637
β2 : 0.673 (0.0756) R2dC : 0.113 R2C : -0.243
β3 : 1.32 (0.0581) R2dE : 0.757 R2E : 0.387
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0975 (0.0522) R2dN8 : 0.00513 R2N8 : -0.00814
σ : 0.456
deviance : 96.02
__
_____
C
peak time of C : 9.23
E
wheather : radiation
threshold : 0.03002
memory length : 111
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90 0.446 11.7 0.899 0.645 1.24 -1.59 -1.12 0.107 8.31 0.03 108 -- --
92.91 0.449 11.7 0.923 0.546 0.945 -1.49 -- 0.0913 5.99 0.03003 113 -- --
94.89 0.454 11.7 0.83 0.624 1.27 -- -0.465 0.119 8.84 0.03017 111 -- --
96.02 0.456 11.7 0.825 0.673 1.32 -- -- 0.0975 9.23 0.03002 111 -- --
110.74 0.49 11.7 0.889 -- 1.24 -- -0.522 0.114 -- 0.02018 184 -- --
118.33 0.51 11.8 0.691 1.26 -- -0.921 -- -0.0062 2.54 -- -- -- --
121.31 0.516 11.8 0.715 1.25 -- -- -- -0.000388 2.45 -- -- -- --
112 0.493 11.7 0.895 -- 1.22 -- -- 0.135 -- 0.02 196 -- --
114.26 0.498 11.7 -- 0.601 1.2 -- -- 0.0203 8.39 0.03998 111 -- --
214.08 0.684 11.8 0.768 -- -- -- -- 0.0307 -- -- -- -- --
134.77 0.543 11.8 -- 1.27 -- -- -- -0.08 2.45 -- -- -- --
127.76 0.526 11.7 -- -- 1.07 -- -- 0.0399 -- 0.01313 194 -- --
229.64 0.707 11.8 -- -- -- -- -- -0.0545 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.53 radiation 1.0 90 < th dose dependent sin 12 NA
2 80.82 radiation 1.0 90 < th dose independent sin 12 NA
3 81.52 radiation 1.0 90 > th dose independent sin 12 NA
6 82.76 radiation 1.0 90 > th dose independent rect. 17 15
10 84.57 radiation 1.0 90 > th dose independent rect. 15 17
13 85.45 humidity 60.0 270 > th dose independent rect. 17 10
17 85.69 radiation 10.0 270 < th dose dependent rect. 16 11
21 86.02 temperature 30.0 270 < th dose independent rect. 17 10
23 86.25 radiation 40.0 90 < th dose independent rect. 5 14
29 86.46 precipitation 0.1 270 < th dose independent rect. 3 14
31 86.46 precipitation 0.1 270 < th dose dependent rect. 3 14
36 86.88 radiation 10.0 270 < th dose independent rect. 17 10
37 86.94 radiation 1.0 270 < th dose dependent rect. 5 22
40 87.05 radiation 1.0 90 < th dose dependent rect. 19 16
41 87.10 radiation 1.0 30 > th dose independent rect. 5 4
52 87.12 radiation 1.0 90 < th dose dependent rect. 19 12
63 87.56 wind 9.0 270 < th dose independent rect. 17 10
65 87.62 temperature 10.0 270 > th dose independent rect. 17 10
69 87.62 temperature 10.0 270 > th dose independent rect. 3 14
70 87.62 atmosphere 1015.0 270 < th dose independent rect. 3 14
72 87.73 temperature 15.0 10 > th dose dependent rect. 5 4
75 87.78 atmosphere 995.0 270 > th dose independent rect. 17 10
76 87.80 temperature 10.0 270 > th dose dependent rect. 3 4
77 87.82 radiation 1.0 270 < th dose independent rect. 6 21
86 88.21 precipitation 0.1 270 < th dose independent rect. 3 4
88 88.21 precipitation 0.1 270 < th dose dependent rect. 3 4
92 88.37 radiation 10.0 270 < th dose independent rect. 3 4
106 88.47 radiation 1.0 90 < th dose dependent rect. 19 20
112 88.59 wind 5.0 270 < th dose independent rect. 3 4
113 88.59 wind 9.0 270 < th dose independent rect. 3 14
118 88.75 radiation 1.0 90 < th dose dependent rect. 19 22
143 88.89 temperature 10.0 270 > th dose dependent rect. 4 2
151 89.00 humidity 70.0 270 > th dose independent rect. 3 4
153 89.02 radiation 40.0 270 < th dose dependent rect. 3 4
158 89.09 temperature 10.0 270 > th dose independent rect. 3 4
160 89.09 temperature 30.0 270 < th dose independent rect. 3 4
161 89.09 humidity 50.0 270 > th dose independent rect. 3 4
163 89.09 atmosphere 995.0 270 > th dose independent rect. 3 4
164 89.09 atmosphere 1015.0 270 < th dose independent rect. 3 4
166 89.09 temperature 10.0 270 > th dose independent rect. 7 20
171 89.18 wind 9.0 270 < th dose independent rect. 7 20
173 89.20 precipitation 0.1 270 < th dose independent rect. 17 10
174 89.20 precipitation 0.1 270 < th dose dependent rect. 17 10
175 89.27 radiation 1.0 270 > th dose independent rect. 10 22
176 89.28 radiation 1.0 90 < th dose independent rect. 19 12
178 89.30 radiation 40.0 10 < th dose independent rect. 5 15
180 89.31 humidity 50.0 270 > th dose independent rect. 7 20
189 89.46 wind 9.0 270 < th dose dependent rect. 3 4
200 89.56 radiation 40.0 90 < th dose dependent rect. 5 14
212 89.77 humidity 50.0 270 > th dose dependent rect. 17 10
216 89.87 radiation 1.0 90 < th dose independent rect. 19 16
221 89.96 temperature 15.0 90 > th dose independent rect. 5 14
227 90.05 atmosphere 995.0 270 > th dose independent rect. 3 14
248 90.36 precipitation 0.1 270 < th dose independent rect. 13 18
250 90.36 precipitation 0.1 270 < th dose dependent rect. 13 18
279 90.63 atmosphere 1015.0 90 < th dose independent rect. 5 14
285 90.66 wind 9.0 90 < th dose independent rect. 5 14
289 90.67 humidity 50.0 270 > th dose dependent rect. 3 4
290 90.69 wind 5.0 270 < th dose independent rect. 4 2
292 90.70 radiation 30.0 90 < th dose independent rect. 13 20
308 90.92 precipitation 0.1 90 < th dose independent rect. 5 14
310 90.92 precipitation 0.1 90 < th dose dependent rect. 5 14
321 91.11 radiation 1.0 90 < th dose independent rect. 19 20
324 91.12 precipitation 0.1 270 < th dose independent rect. 10 23
325 91.12 precipitation 0.1 270 < th dose dependent rect. 10 23
335 91.20 atmosphere 995.0 270 > th dose independent rect. 7 20
336 91.20 wind 9.0 270 < th dose dependent rect. 4 2
339 91.23 precipitation 0.1 270 < th dose independent rect. 7 20
340 91.23 precipitation 0.1 270 < th dose dependent rect. 7 20
342 91.25 temperature 10.0 270 > th dose independent rect. 4 2
344 91.25 temperature 30.0 270 < th dose independent rect. 4 2
345 91.25 humidity 50.0 270 > th dose independent rect. 4 2
348 91.25 atmosphere 995.0 270 > th dose independent rect. 4 2
349 91.25 atmosphere 1015.0 270 < th dose independent rect. 4 2
354 91.25 precipitation 0.1 270 < th dose independent rect. 12 20
355 91.25 temperature 10.0 270 > th dose independent rect. 6 22
356 91.25 precipitation 0.1 270 < th dose dependent rect. 12 20
358 91.28 radiation 40.0 270 < th dose dependent rect. 4 2
366 91.34 wind 9.0 10 < th dose dependent rect. 5 4
368 91.36 precipitation 0.1 10 < th dose independent rect. 5 4
370 91.36 precipitation 0.1 10 < th dose dependent rect. 5 4
387 91.45 temperature 20.0 30 > th dose independent rect. 5 4
399 91.57 wind 7.0 10 < th dose independent rect. 5 4
401 91.57 temperature 10.0 10 > th dose independent rect. 5 4
403 91.57 temperature 30.0 10 < th dose independent rect. 5 4
404 91.57 humidity 50.0 10 > th dose independent rect. 5 4
406 91.57 atmosphere 995.0 10 > th dose independent rect. 5 4
407 91.57 atmosphere 1015.0 10 < th dose independent rect. 5 4
408 91.57 temperature 10.0 10 > th dose independent rect. 9 20
409 91.57 radiation 1.0 90 < th dose independent rect. 19 22
412 91.59 wind 9.0 270 < th dose independent rect. 6 22
433 91.67 humidity 50.0 270 > th dose independent rect. 7 6
435 91.68 temperature 10.0 270 > th dose independent rect. 7 6
436 91.68 atmosphere 995.0 270 > th dose independent rect. 7 6
437 91.68 atmosphere 1015.0 270 < th dose independent rect. 7 6
438 91.68 temperature 10.0 270 > th dose independent rect. 13 18
466 91.77 precipitation 0.1 270 < th dose independent rect. 7 6
469 91.77 precipitation 0.1 270 < th dose dependent rect. 7 6
477 91.81 precipitation 0.1 10 < th dose independent rect. 14 19
478 91.81 precipitation 0.1 10 < th dose dependent rect. 14 19
495 91.84 radiation 30.0 90 < th dose independent rect. 15 18
516 91.94 wind 9.0 270 < th dose independent rect. 7 6
540 91.99 wind 9.0 30 < th dose independent rect. 9 20
543 92.01 radiation 1.0 10 > th dose independent rect. 9 5
583 92.11 humidity 50.0 270 > th dose independent rect. 8 4
607 92.24 wind 9.0 270 < th dose independent rect. 13 18
629 92.30 radiation 40.0 10 < th dose independent rect. 13 20
635 92.31 humidity 50.0 270 > th dose dependent rect. 4 2
642 92.34 atmosphere 995.0 10 > th dose independent rect. 9 20
658 92.41 temperature 10.0 10 > th dose independent rect. 9 5
660 92.41 atmosphere 995.0 10 > th dose independent rect. 9 5
661 92.41 atmosphere 1015.0 10 < th dose independent rect. 9 5
662 92.41 precipitation 0.1 10 < th dose independent rect. 9 5
664 92.41 temperature 10.0 10 > th dose independent rect. 14 19
665 92.41 precipitation 0.1 10 < th dose dependent rect. 9 5
666 92.41 radiation 40.0 10 < th dose dependent rect. 5 14
675 92.44 wind 1.0 90 > th dose independent rect. 8 7
701 92.54 radiation 1.0 90 > th dose dependent rect. 17 14
706 92.57 temperature 10.0 270 > th dose independent rect. 8 4
707 92.57 atmosphere 995.0 270 > th dose independent rect. 8 4
708 92.57 atmosphere 1015.0 270 < th dose independent rect. 8 4
719 92.57 temperature 10.0 270 > th dose independent rect. 12 20
734 92.62 precipitation 0.1 270 < th dose independent rect. 8 4
736 92.62 precipitation 0.1 270 < th dose dependent rect. 8 4
755 92.66 wind 1.0 30 > th dose independent rect. 9 5
765 92.69 humidity 50.0 270 > th dose independent rect. 9 1
809 92.79 wind 1.0 270 > th dose independent rect. 8 4
818 92.86 wind 9.0 270 < th dose independent rect. 8 4
822 92.87 temperature 10.0 270 > th dose independent rect. 9 1
823 92.87 atmosphere 995.0 270 > th dose independent rect. 9 1
824 92.87 atmosphere 1015.0 270 < th dose independent rect. 9 1
826 92.87 temperature 10.0 270 > th dose independent rect. 10 23
842 92.92 precipitation 0.1 30 < th dose independent rect. 9 20
844 92.92 precipitation 0.1 30 < th dose dependent rect. 9 20
845 92.93 temperature 10.0 1440 > th dose independent rect. 10 5
849 92.93 temperature 10.0 1440 > th dose independent rect. 15 19
876 93.04 precipitation 0.1 270 < th dose independent rect. 9 1
877 93.04 radiation 1.0 90 > th dose independent rect. 8 7
879 93.04 precipitation 0.1 270 < th dose dependent rect. 9 1
884 93.07 wind 9.0 270 < th dose independent rect. 9 1
903 93.13 wind 9.0 10 < th dose independent rect. 14 19
926 93.21 atmosphere 995.0 270 > th dose independent rect. 13 18
946 93.25 atmosphere 995.0 90 > th dose independent rect. 5 14
970 93.30 wind 9.0 270 < th dose independent rect. 12 20
983 93.33 atmosphere 995.0 10 > th dose independent rect. 14 19
997 93.36 radiation 1.0 90 < th dose dependent rect. 15 16