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Os02g0815500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase class III (EC 1.1.1.1) (Glutathione-dependent formaldehyde dehydrogenase) (EC 1.2.1.1) (FDH) (FALDH) (GSH-FDH).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.9 (0.0116) R2 : 0.849
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.4 (0.0275) R2dC : 0.852 R2C : 0.849
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.013 (0.0243) R2dN8 : 0.000122 R2N8 : -0.00249
σ : 0.218
deviance : 21.68
__
_____
C
peak time of C : 23.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.12 0.2 14.9 0.000481 1.38 0.277 -0.587 -0.387 0.0338 23.5 39.5 4602 -- --
18.31 0.199 14.9 -0.00443 1.38 0.274 -0.583 -- 0.042 23.4 39.49 4748 -- --
19.6 0.206 14.9 0.0208 1.37 0.292 -- -0.441 0.0386 23.5 39.49 4597 -- --
19.87 0.208 14.9 0.00978 1.38 0.288 -- -- 0.0458 23.4 39.5 4724 -- --
119.56 0.512 14.9 0.0513 -- 0.778 -- -0.654 0.0101 -- 39.49 4597 -- --
19.87 0.209 14.9 0.0392 1.39 -- -0.628 -- 0.0177 23.5 -- -- -- --
21.57 0.217 14.9 0.0646 1.39 -- -- -- 0.0202 23.5 -- -- -- --
120.75 0.514 14.9 0.074 -- 0.789 -- -- 0.0148 -- 39.49 4597 -- --
19.87 0.208 14.9 -- 1.38 0.291 -- -- 0.0432 23.4 39.5 4745 -- --
143.61 0.56 14.9 0.102 -- -- -- -- 0.0352 -- -- -- -- --
21.68 0.218 14.9 -- 1.4 -- -- -- 0.013 23.5 -- -- -- --
120.9 0.514 14.9 -- -- 0.791 -- -- 0.00657 -- 39.49 4597 -- --
143.88 0.56 14.9 -- -- -- -- -- 0.0238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.11 temperature 20.0 270 > th dose dependent rect. 23 2
2 17.21 temperature 20.0 90 > th dose dependent rect. 23 5
10 17.39 radiation 40.0 90 < th dose dependent rect. 9 19
11 17.40 radiation 20.0 90 < th dose dependent rect. 7 21
18 17.48 temperature 25.0 270 > th dose independent rect. 22 5
24 17.54 radiation 40.0 90 < th dose dependent rect. 11 17
26 17.55 humidity 80.0 10 > th dose independent rect. 7 22
38 17.60 temperature 20.0 10 > th dose dependent rect. 23 6
54 17.66 radiation 30.0 270 < th dose independent rect. 11 16
61 17.68 temperature 25.0 270 > th dose independent sin 11 NA
74 17.72 radiation 40.0 4320 < th dose independent sin 11 NA
76 17.72 radiation 40.0 90 < th dose independent rect. 9 19
89 17.75 radiation 40.0 4320 < th dose independent rect. 4 7
100 17.75 radiation 40.0 4320 < th dose independent rect. 16 19
109 17.75 humidity 50.0 10 > th dose dependent rect. 7 22
111 17.76 radiation 40.0 4320 < th dose independent rect. 7 4
118 17.76 humidity 70.0 10 > th dose dependent rect. 7 22
119 17.77 humidity 90.0 270 < th dose independent rect. 23 3
125 17.78 radiation 40.0 10 < th dose dependent rect. 9 20
126 17.79 humidity 90.0 270 < th dose independent rect. 22 5
138 17.81 radiation 40.0 4320 < th dose independent rect. 8 1
146 17.81 radiation 30.0 4320 > th dose dependent rect. 7 4
166 17.82 wind 1.0 43200 < th dose independent rect. 4 7
172 17.82 radiation 30.0 4320 > th dose dependent sin 11 NA
183 17.83 humidity 50.0 10 > th dose dependent rect. 9 20
203 17.84 radiation 40.0 270 < th dose independent rect. 7 20
214 17.85 wind 3.0 90 < th dose dependent rect. 2 1
269 17.91 radiation 30.0 4320 > th dose dependent rect. 8 1
280 17.92 radiation 40.0 4320 > th dose dependent rect. 10 1
327 17.94 temperature 25.0 270 < th dose independent rect. 19 11
373 17.95 radiation 10.0 90 < th dose independent rect. 7 21
404 17.96 humidity 70.0 90 > th dose independent rect. 11 17
413 17.97 temperature 25.0 270 < th dose independent sin 11 NA
414 17.97 wind 1.0 43200 > th dose independent rect. 4 7
429 17.98 radiation 30.0 4320 > th dose independent sin 10 NA
430 17.98 radiation 30.0 4320 > th dose independent rect. 7 4
450 17.98 wind 5.0 10 < th dose dependent rect. 5 4
469 17.98 humidity 50.0 90 > th dose dependent rect. 9 19
475 17.99 temperature 20.0 10 > th dose independent rect. 22 7
481 17.99 temperature 15.0 10 > th dose dependent rect. 18 11
484 18.00 wind 3.0 90 < th dose independent rect. 2 1
485 18.00 wind 3.0 10 < th dose independent rect. 5 4
513 18.01 wind 1.0 43200 < th dose dependent rect. 4 9
534 18.02 temperature 20.0 90 > th dose independent rect. 2 1
572 18.02 atmosphere 1005.0 270 > th dose dependent rect. 24 1
581 18.03 radiation 30.0 4320 > th dose independent rect. 8 1
602 18.04 humidity 80.0 14400 > th dose dependent rect. 2 3
611 18.05 atmosphere 1015.0 1440 < th dose independent rect. 24 5
613 18.05 wind 1.0 43200 < th dose independent rect. 2 12
614 18.05 temperature 25.0 270 < th dose independent rect. 19 14
645 18.07 humidity 60.0 4320 > th dose independent rect. 10 1
653 18.07 humidity 50.0 14400 > th dose dependent rect. 2 2
655 18.07 temperature 20.0 10 > th dose dependent rect. 5 3
671 18.07 wind 1.0 43200 < th dose dependent rect. 4 15
683 18.08 wind 7.0 90 < th dose independent rect. 2 1
685 18.08 temperature 10.0 90 > th dose independent rect. 2 1
687 18.08 temperature 30.0 90 < th dose independent rect. 2 1
688 18.08 humidity 50.0 90 > th dose independent rect. 2 1
692 18.08 atmosphere 995.0 90 > th dose independent rect. 2 1
693 18.08 atmosphere 1010.0 90 < th dose independent rect. 2 1
695 18.08 radiation 1.0 90 < th dose independent rect. 2 1
700 18.08 precipitation 0.1 90 < th dose independent rect. 2 1
707 18.08 temperature 10.0 90 > th dose independent rect. 3 23
709 18.08 radiation 1.0 90 < th dose dependent rect. 2 1
714 18.08 precipitation 0.1 90 < th dose dependent rect. 2 1
781 18.10 temperature 20.0 90 > th dose independent rect. 4 13
792 18.10 atmosphere 1005.0 90 > th dose dependent rect. 24 4
819 18.11 humidity 70.0 90 > th dose independent rect. 13 15
850 18.12 radiation 40.0 4320 < th dose independent rect. 10 1
854 18.12 radiation 40.0 720 < th dose independent rect. 7 12
859 18.12 humidity 50.0 90 > th dose dependent rect. 2 1
864 18.12 humidity 50.0 720 > th dose dependent rect. 7 5
869 18.13 radiation 1.0 10 < th dose independent sin 9 NA
871 18.13 wind 5.0 270 < th dose independent rect. 23 2
882 18.13 radiation 1.0 90 < th dose independent rect. 5 23
883 18.13 radiation 1.0 10 < th dose dependent sin 9 NA
885 18.13 atmosphere 995.0 90 > th dose dependent rect. 2 1
886 18.13 wind 3.0 90 < th dose dependent rect. 5 2
899 18.13 humidity 60.0 4320 < th dose dependent rect. 18 17
905 18.14 atmosphere 1010.0 270 < th dose independent rect. 23 2
907 18.14 temperature 20.0 90 > th dose independent rect. 4 3
912 18.14 radiation 40.0 10 < th dose independent rect. 9 20
914 18.14 precipitation 0.1 90 < th dose independent rect. 3 23
921 18.14 temperature 15.0 90 > th dose dependent rect. 4 4
926 18.14 precipitation 0.1 90 < th dose dependent rect. 3 23
927 18.15 temperature 20.0 10 > th dose independent rect. 5 2
930 18.15 temperature 20.0 90 > th dose independent rect. 4 5
940 18.15 radiation 40.0 720 < th dose independent rect. 15 20
941 18.15 temperature 15.0 10 > th dose independent rect. 7 22
946 18.15 wind 1.0 43200 < th dose dependent rect. 2 17
957 18.16 atmosphere 1010.0 90 < th dose independent rect. 23 5
975 18.16 wind 1.0 43200 < th dose independent rect. 2 17
978 18.16 radiation 40.0 720 < th dose independent rect. 24 19
984 18.16 radiation 20.0 30 < th dose dependent sin 11 NA
999 18.17 humidity 60.0 4320 > th dose independent rect. 10 3
1000 18.17 radiation 40.0 720 < th dose independent rect. 7 5