FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0814600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.87 (0.0446) R2 : 0.276
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.71 (0.13) R2dE : 0.276 R2E : 0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.149 (0.0939) R2dN8 : 0.00481 R2N8 : 0.000599
σ : 0.838
deviance : 323.51
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.58
memory length : 12
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.92
open length of G : 17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
311.66 0.829 4.82 -0.00178 0.665 2.07 1.75 1.93 -0.0846 6.73 8.749 93 8.38 16.6
313.78 0.825 4.81 -0.017 0.798 2.19 0.887 -- -0.054 7.21 6.353 161 7.87 16.9
316.98 0.829 4.82 -0.002 0.71 2.13 -- 1.5 -0.0773 6.04 8.057 78 8.5 16.8
313.23 0.824 4.81 -0.0994 1.21 2.65 -- -- -0.108 6.1 4.086 177 7.73 16.7
324.35 0.839 4.84 0.106 -- 1.65 -- 1.04 -0.0586 -- 12.99 47 8.61 17
378.73 0.912 4.85 0.166 1.05 -- 1.34 -- -0.0522 15.6 -- -- -- --
383.69 0.917 4.85 0.187 1.07 -- -- -- -0.044 16 -- -- -- --
324.66 0.839 4.87 -0.0363 -- 1.76 -- -- -0.138 -- 13.36 28 8.78 16.9
313.01 0.824 4.82 -- 1.27 2.68 -- -- -0.0864 6.14 4.164 185 7.63 16.7
445.86 0.987 4.85 0.144 -- -- -- -- -0.0724 -- -- -- -- --
384.61 0.917 4.85 -- 1.06 -- -- -- -0.0649 16 -- -- -- --
323.51 0.838 4.87 -- -- 1.71 -- -- -0.149 -- 12.58 12 8.92 17
446.4 0.986 4.85 -- -- -- -- -- -0.0884 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.71 temperature 10.0 90 > th dose dependent rect. 8 17
4 314.12 temperature 10.0 10 > th dose dependent rect. 9 16
35 319.94 temperature 10.0 270 > th dose dependent rect. 18 7
39 320.76 temperature 10.0 270 > th dose dependent rect. 19 16
40 320.77 temperature 30.0 90 < th dose dependent rect. 1 19
45 321.30 temperature 30.0 10 < th dose dependent rect. 1 19
66 323.58 temperature 25.0 270 < th dose independent rect. 24 20
76 324.21 radiation 10.0 43200 < th dose dependent rect. 21 7
79 324.46 wind 1.0 270 > th dose independent rect. 1 17
123 326.81 radiation 40.0 10 < th dose dependent rect. 14 19
129 327.13 radiation 1.0 270 < th dose independent rect. 1 17
137 327.47 atmosphere 995.0 270 > th dose independent rect. 1 17
150 327.90 wind 7.0 90 < th dose independent rect. 9 16
162 328.18 wind 1.0 270 > th dose independent rect. 24 7
193 328.86 wind 7.0 270 < th dose independent rect. 18 7
207 329.26 precipitation 0.1 270 < th dose independent rect. 18 7
209 329.26 precipitation 0.1 270 < th dose dependent rect. 18 7
214 329.48 radiation 10.0 270 < th dose dependent rect. 24 18
215 329.50 temperature 10.0 270 > th dose independent rect. 18 7
216 329.50 humidity 50.0 270 > th dose independent rect. 18 7
217 329.50 radiation 20.0 270 < th dose independent rect. 18 7
220 329.50 temperature 10.0 270 > th dose independent rect. 1 17
221 329.50 atmosphere 1015.0 270 < th dose independent rect. 1 17
226 329.58 radiation 40.0 270 < th dose dependent rect. 18 7
227 329.58 temperature 30.0 90 < th dose dependent rect. 1 8
236 329.74 wind 7.0 10 < th dose independent rect. 9 16
249 329.93 temperature 20.0 270 > th dose independent rect. 18 7
255 330.07 temperature 10.0 270 > th dose dependent rect. 6 6
266 330.28 atmosphere 995.0 270 > th dose independent rect. 18 7
277 330.51 wind 9.0 270 < th dose independent rect. 1 17
279 330.54 temperature 30.0 270 < th dose dependent rect. 24 6
290 330.78 atmosphere 1015.0 270 < th dose independent rect. 18 7
297 330.89 temperature 15.0 10 > th dose dependent rect. 20 19
299 330.91 precipitation 0.1 270 < th dose independent rect. 1 17
300 330.91 precipitation 0.1 270 < th dose dependent rect. 1 17
301 330.94 temperature 30.0 270 < th dose independent rect. 18 7
307 331.02 radiation 1.0 270 > th dose independent rect. 17 21
308 331.02 wind 9.0 270 < th dose dependent rect. 7 17
320 331.19 radiation 20.0 90 < th dose independent rect. 1 8
338 331.54 wind 9.0 90 < th dose dependent rect. 9 16
340 331.57 humidity 70.0 90 > th dose independent rect. 1 7
382 332.20 temperature 25.0 270 > th dose independent rect. 17 20
394 332.35 precipitation 0.1 90 < th dose independent rect. 8 17
395 332.35 precipitation 0.1 90 < th dose dependent rect. 8 17
409 332.48 radiation 1.0 270 > th dose independent sin 3 NA
420 332.60 radiation 1.0 270 < th dose independent sin 3 NA
434 332.69 atmosphere 995.0 270 > th dose independent rect. 13 17
440 332.73 humidity 50.0 270 > th dose independent rect. 1 17
465 332.95 wind 1.0 270 > th dose independent rect. 18 7
497 333.22 atmosphere 995.0 90 > th dose dependent rect. 1 7
498 333.23 wind 5.0 90 < th dose independent rect. 1 7
516 333.39 temperature 30.0 90 < th dose dependent rect. 14 18
520 333.43 precipitation 0.1 90 < th dose independent rect. 1 7
521 333.43 radiation 30.0 10 < th dose independent rect. 1 8
522 333.43 precipitation 0.1 90 < th dose dependent rect. 1 7
536 333.53 humidity 70.0 10 > th dose independent rect. 1 8
539 333.54 temperature 30.0 10 < th dose dependent rect. 15 18
573 333.71 temperature 30.0 90 < th dose independent rect. 1 8
603 333.84 temperature 10.0 10 > th dose dependent rect. 20 7
612 333.90 radiation 20.0 30 < th dose independent rect. 14 19
626 333.94 radiation 30.0 270 < th dose dependent rect. 24 7
638 333.99 radiation 20.0 90 < th dose independent rect. 15 17
647 334.02 radiation 10.0 10 < th dose dependent sin 0 NA
651 334.04 temperature 10.0 90 > th dose independent rect. 1 7
654 334.04 humidity 50.0 90 > th dose independent rect. 1 7
656 334.04 atmosphere 995.0 90 > th dose independent rect. 1 7
657 334.04 atmosphere 1015.0 90 < th dose independent rect. 1 7
658 334.04 temperature 10.0 90 > th dose independent rect. 8 17
671 334.12 radiation 40.0 270 < th dose independent rect. 13 17
687 334.23 atmosphere 1015.0 90 < th dose independent rect. 8 17
726 334.39 temperature 15.0 10 > th dose dependent rect. 21 15
737 334.44 wind 5.0 270 < th dose independent rect. 1 5
738 334.44 precipitation 0.1 270 < th dose independent rect. 6 19
740 334.44 precipitation 0.1 270 < th dose dependent rect. 6 19
753 334.53 atmosphere 995.0 10 > th dose dependent rect. 1 8
760 334.55 temperature 10.0 90 > th dose dependent rect. 8 7
766 334.58 wind 9.0 270 < th dose dependent rect. 17 8
785 334.71 temperature 20.0 90 > th dose independent rect. 8 17
831 334.93 precipitation 0.1 10 < th dose independent rect. 9 16
834 334.93 precipitation 0.1 10 < th dose dependent rect. 9 16
847 334.99 radiation 20.0 30 < th dose independent rect. 1 19
855 335.03 radiation 1.0 270 > th dose independent rect. 6 7
925 335.27 wind 7.0 10 < th dose independent rect. 1 8
928 335.29 radiation 30.0 10 < th dose dependent rect. 3 17
929 335.30 precipitation 0.1 270 < th dose independent rect. 6 8
930 335.30 precipitation 0.1 270 < th dose dependent rect. 6 8
939 335.36 wind 9.0 270 < th dose dependent rect. 6 7
966 335.46 humidity 50.0 90 > th dose independent rect. 3 17
979 335.54 temperature 20.0 10 > th dose independent rect. 9 17
984 335.57 temperature 10.0 270 > th dose independent rect. 6 7
985 335.57 atmosphere 995.0 270 > th dose independent rect. 6 7
986 335.57 atmosphere 1015.0 270 < th dose independent rect. 6 7
987 335.57 humidity 50.0 270 > th dose independent rect. 6 8
988 335.57 temperature 10.0 270 > th dose independent rect. 13 17
1000 335.62 wind 1.0 270 > th dose independent rect. 13 17