Os02g0814100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lecithin:cholesterol acyltransferase family protein.
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Os02g0814100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lecithin:cholesterol acyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.33 | 0.323 | 9.09 | -1.28 | 0.906 | -0.376 | 0.335 | -1.75 | -0.0683 | 8.34 | 1.098 | 4325 | -- | -- |
| 48.36 | 0.324 | 9.04 | -1.02 | 0.873 | -0.367 | 0.218 | -- | 0.0389 | 8.58 | 21.19 | 10566 | -- | -- |
| 47.57 | 0.321 | 9.09 | -1.27 | 0.908 | -0.382 | -- | -1.78 | -0.0684 | 8.26 | 1.11 | 4286 | -- | -- |
| 48.39 | 0.324 | 9.03 | -0.982 | 0.882 | -0.328 | -- | -- | 0.0467 | 8.4 | 21.2 | 10716 | -- | -- |
| 69.91 | 0.389 | 9.13 | -0.782 | -- | -0.615 | -- | -1.87 | -0.063 | -- | 1.055 | 903 | -- | -- |
| 52.32 | 0.339 | 9.07 | -0.94 | 0.899 | -- | 0.307 | -- | -0.0476 | 8.39 | -- | -- | -- | -- |
| 52.61 | 0.34 | 9.07 | -0.931 | 0.899 | -- | -- | -- | -0.0476 | 8.4 | -- | -- | -- | -- |
| 57.78 | 0.354 | 9.09 | -0.857 | -- | -1.27 | -- | -- | 0.0394 | -- | 2.139 | 1000 | -- | -- |
| 70.35 | 0.391 | 9.04 | -- | 0.923 | -0.299 | -- | -- | 0.0661 | 8.37 | 20 | 11941 | -- | -- |
| 97.59 | 0.462 | 9.09 | -0.926 | -- | -- | -- | -- | -0.0384 | -- | -- | -- | -- | -- |
| 75.45 | 0.406 | 9.04 | -- | 0.895 | -- | -- | -- | 0.0561 | 8.48 | -- | -- | -- | -- |
| 76.44 | 0.407 | 9.09 | -- | -- | -1.31 | -- | -- | 0.101 | -- | 1.86 | 1017 | -- | -- |
| 120.21 | 0.512 | 9.07 | -- | -- | -- | -- | -- | 0.0643 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.14 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 3 | 44.93 | temperature | 25.0 | 720 | > th | dose independent | rect. | 24 | 11 |
| 8 | 45.26 | temperature | 25.0 | 720 | > th | dose independent | rect. | 2 | 8 |
| 21 | 45.58 | temperature | 25.0 | 720 | > th | dose independent | sin | 6 | NA |
| 23 | 45.59 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 24 | 45.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 26 | 45.64 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 38 | 45.86 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 43 | 45.94 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 60 | 46.12 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 72 | 46.20 | temperature | 30.0 | 90 | > th | dose independent | sin | 5 | NA |
| 81 | 46.27 | temperature | 30.0 | 90 | < th | dose independent | sin | 4 | NA |
| 93 | 46.37 | temperature | 30.0 | 270 | > th | dose independent | sin | 9 | NA |
| 95 | 46.37 | temperature | 25.0 | 720 | < th | dose independent | rect. | 23 | 12 |
| 96 | 46.37 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 100 | 46.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 104 | 46.41 | temperature | 30.0 | 90 | > th | dose independent | rect. | 18 | 21 |
| 106 | 46.41 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 108 | 46.42 | temperature | 30.0 | 30 | > th | dose independent | rect. | 9 | 7 |
| 206 | 46.57 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 215 | 46.61 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 9 |
| 233 | 46.64 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 247 | 46.69 | temperature | 25.0 | 720 | < th | dose independent | sin | 7 | NA |
| 270 | 46.74 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 295 | 46.79 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 318 | 46.81 | wind | 1.0 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 377 | 46.90 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 7 |
| 379 | 46.90 | wind | 1.0 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 390 | 46.93 | temperature | 30.0 | 270 | < th | dose independent | sin | 9 | NA |
| 402 | 46.94 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 454 | 47.00 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 14 |
| 473 | 47.03 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 482 | 47.05 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 4 |
| 492 | 47.07 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 494 | 47.07 | temperature | 30.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 506 | 47.09 | temperature | 30.0 | 270 | > th | dose independent | rect. | 11 | 1 |
| 521 | 47.11 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 560 | 47.15 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 575 | 47.17 | radiation | 1.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 593 | 47.17 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 628 | 47.20 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 12 | 13 |
| 677 | 47.23 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 697 | 47.25 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 15 |
| 732 | 47.27 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 738 | 47.27 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 760 | 47.28 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 21 |
| 763 | 47.28 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 765 | 47.28 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 786 | 47.30 | radiation | 1.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 805 | 47.30 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 19 |
| 852 | 47.34 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 856 | 47.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 861 | 47.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 870 | 47.35 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 879 | 47.36 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 932 | 47.39 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 989 | 47.43 | radiation | 1.0 | 4320 | > th | dose independent | no | NA | NA |
| 994 | 47.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 999 | 47.43 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 1000 | 47.43 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 10 |