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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0813600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Very-long-chain 3-ketoacyl-CoA synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.0802) R2 : 0.206
β1 : -2.97 (0.46) R2dD : 0.258 R2D : -0.126
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.67 (0.27) R2dE : 0.257 R2E : 0.082
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.62 (1.72) R2dD*E : 0.128 R2D*E : -0.19
γ1 : -0.533 (0.186) R2dN8 : 0.0319 R2N8 : -0.0674
σ : 1.26
deviance : 733.31
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.24
memory length : 862
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.93
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
727.04 1.27 3.9 -2.93 0.401 2.49 0.098 -7.87 -0.483 6.29 22.49 864 7.17 --
758.69 1.28 3.71 -1.28 0.284 2.03 0.0412 -- -0.00828 7.89 18.51 806 7.86 --
727.03 1.26 3.9 -2.93 0.405 2.49 -- -7.83 -0.479 6.18 22.52 866 7.12 --
757.6 1.28 3.71 -1.22 0.521 1.78 -- -- 0.00786 5.54 22.63 835 6.73 --
733.31 1.26 3.92 -2.97 -- 2.67 -- -7.62 -0.533 -- 22.24 862 6.93 --
826.02 1.35 3.64 -0.817 1.12 -- -0.482 -- 0.31 4.38 -- -- -- --
826.65 1.35 3.64 -0.813 1.12 -- -- -- 0.313 4.41 -- -- -- --
760.45 1.28 3.73 -1.32 -- 2.16 -- -- -0.0603 -- 18 777 7.1 --
793.01 1.31 3.68 -- 0.551 1.51 -- -- 0.171 5.48 22.3 809 6.95 --
893.57 1.4 3.65 -0.769 -- -- -- -- 0.342 -- -- -- -- --
844.06 1.36 3.62 -- 1.1 -- -- -- 0.403 4.43 -- -- -- --
801.94 1.32 3.7 -- -- 1.87 -- -- 0.128 -- 18.33 705 6.58 --
909.16 1.41 3.63 -- -- -- -- -- 0.428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 718.54 temperature 20 270 > th dose dependent rect. 24 7
6 730.47 temperature 20 720 > th dose dependent rect. 17 12
31 737.09 temperature 20 720 > th dose dependent sin 13 NA
41 739.32 temperature 20 720 > th dose dependent rect. 22 1
52 740.25 temperature 20 270 > th dose independent rect. 24 7
54 740.57 temperature 30 720 < th dose dependent rect. 18 9
60 740.92 wind 3 43200 > th dose independent rect. 11 1
63 741.27 wind 3 43200 < th dose independent rect. 11 1
100 745.24 wind 5 43200 < th dose dependent rect. 11 1
108 745.60 wind 1 43200 > th dose dependent rect. 10 4
109 745.64 wind 3 43200 > th dose dependent rect. 2 15
112 745.71 wind 9 43200 < th dose dependent rect. 10 4
141 746.38 wind 3 43200 > th dose dependent sin 1 NA
144 746.40 wind 1 43200 > th dose dependent rect. 8 7
148 746.44 wind 9 43200 < th dose dependent rect. 8 7
151 746.50 wind 3 43200 > th dose independent rect. 9 4
152 746.52 humidity 90 43200 > th dose independent rect. 2 17
158 746.64 humidity 90 43200 > th dose independent rect. 2 14
174 746.90 wind 3 43200 < th dose independent rect. 9 4
176 746.92 humidity 90 43200 > th dose independent rect. 2 21
183 747.05 humidity 90 43200 < th dose independent rect. 2 21
213 747.35 radiation 1 43200 > th dose independent rect. 5 2
216 747.36 radiation 1 43200 < th dose independent rect. 5 2
219 747.39 wind 5 43200 < th dose independent rect. 1 18
221 747.41 wind 5 43200 < th dose independent rect. 2 16
252 747.56 radiation 1 43200 < th dose independent rect. 21 10
254 747.57 radiation 1 43200 < th dose independent rect. 24 7
265 747.60 radiation 1 43200 < th dose independent rect. 2 5
271 747.61 wind 5 43200 < th dose independent rect. 23 20
294 747.69 humidity 90 43200 < th dose independent rect. 2 17
297 747.72 humidity 90 43200 < th dose independent rect. 22 1
298 747.72 wind 5 43200 > th dose independent rect. 2 17
336 747.94 wind 5 43200 < th dose independent sin 1 NA
348 748.04 humidity 90 43200 > th dose independent sin 3 NA
404 748.24 wind 5 43200 < th dose independent rect. 9 23
450 748.41 humidity 90 43200 < th dose independent sin 3 NA
461 748.45 wind 5 43200 > th dose independent sin 1 NA
464 748.45 temperature 30 720 < th dose dependent rect. 16 14
501 748.53 wind 3 43200 > th dose dependent rect. 9 23
542 748.69 wind 3 43200 > th dose dependent no NA NA
550 748.72 wind 5 43200 < th dose independent no NA NA
554 748.73 wind 5 43200 > th dose independent rect. 9 22
591 748.79 wind 3 43200 > th dose dependent rect. 16 23
630 748.89 wind 5 43200 < th dose independent rect. 18 23
692 749.07 humidity 90 43200 > th dose dependent rect. 4 19
705 749.10 humidity 90 43200 > th dose dependent rect. 4 15
739 749.19 wind 5 43200 < th dose independent rect. 14 23
768 749.25 humidity 90 43200 > th dose dependent rect. 4 17
789 749.30 wind 5 43200 > th dose independent rect. 5 23
809 749.34 wind 5 43200 > th dose independent no NA NA
823 749.37 humidity 90 43200 > th dose independent rect. 4 6
850 749.45 humidity 90 43200 < th dose independent rect. 6 20
870 749.50 humidity 90 43200 < th dose independent rect. 13 10
884 749.53 humidity 90 43200 > th dose independent rect. 18 1
934 749.60 radiation 1 1440 < th dose dependent rect. 18 11
951 749.64 wind 5 43200 > th dose independent rect. 18 23