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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0813100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.68 (0.0474) R2 : 0.5
β1 : 1.37 (0.174) R2dD : 0.0713 R2D : 0.0878
β2 : 1.05 (0.149) R2dC : 0.0805 R2C : 0.178
β3 : -1.5 (0.167) R2dE : 0.132 R2E : 0.248
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.695 (0.101) R2dN8 : 0.0703 R2N8 : 0.0896
σ : 0.885
deviance : 361.24
__
_____
C
peak time of C : 18.3
E
wheather : humidity
threshold : 67
memory length : 312
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.74 0.88 5.69 1.53 0.996 -1.24 0.0406 -2.45 -0.754 18.8 70.03 282 -- --
359.7 0.883 5.68 1.39 1.1 -1.43 0.972 -- -0.698 18 67.04 312 -- --
350.4 0.872 5.69 1.54 0.974 -1.26 -- -2.49 -0.755 18.7 70 294 -- --
361.24 0.885 5.68 1.37 1.05 -1.5 -- -- -0.695 18.3 67 312 -- --
373.54 0.9 5.7 1.45 -- -1.94 -- -2.15 -0.813 -- 72 433 -- --
409.61 0.949 5.71 1.55 1.83 -- 1.93 -- -0.726 17.5 -- -- -- --
418.65 0.958 5.7 1.54 1.84 -- -- -- -0.718 17.6 -- -- -- --
381.91 0.91 5.7 1.28 -- -2.14 -- -- -0.864 -- 70.87 422 -- --
410.53 0.944 5.69 -- 0.971 -1.73 -- -- -0.749 18.4 66.49 331 -- --
594.7 1.14 5.68 1.48 -- -- -- -- -0.763 -- -- -- -- --
481.28 1.03 5.74 -- 1.82 -- -- -- -0.89 17.6 -- -- -- --
424.91 0.96 5.73 -- -- -2.21 -- -- -1.01 -- 70.5 422 -- --
652.61 1.19 5.71 -- -- -- -- -- -0.927 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 335.96 humidity 90.0 14400 > th dose dependent rect. 9 1
2 337.39 humidity 80.0 14400 < th dose independent rect. 8 4
3 337.79 humidity 80.0 14400 > th dose independent rect. 8 4
11 340.35 humidity 90.0 14400 > th dose dependent rect. 19 1
15 340.93 humidity 70.0 14400 > th dose dependent rect. 11 1
16 340.94 humidity 90.0 14400 > th dose dependent rect. 7 15
18 341.07 temperature 20.0 14400 < th dose independent rect. 20 1
25 341.51 humidity 70.0 14400 > th dose dependent rect. 9 3
28 341.71 humidity 90.0 14400 > th dose dependent rect. 15 7
69 343.09 humidity 70.0 270 > th dose independent rect. 11 12
70 343.09 humidity 90.0 14400 > th dose dependent rect. 7 10
84 343.55 humidity 90.0 14400 > th dose dependent rect. 7 6
90 343.73 humidity 90.0 14400 > th dose independent rect. 6 16
97 343.80 humidity 70.0 270 > th dose independent rect. 2 22
109 344.08 humidity 90.0 14400 > th dose dependent sin 22 NA
112 344.12 humidity 90.0 14400 > th dose independent rect. 19 1
117 344.18 humidity 90.0 14400 > th dose independent rect. 7 13
119 344.26 temperature 30.0 270 < th dose independent rect. 2 22
128 344.47 temperature 30.0 270 < th dose independent rect. 3 20
137 344.61 humidity 90.0 14400 > th dose independent rect. 7 1
140 344.70 humidity 90.0 14400 < th dose independent rect. 7 1
155 344.98 precipitation 0.1 14400 > th dose dependent rect. 1 17
168 345.26 humidity 70.0 90 > th dose independent rect. 13 12
174 345.34 humidity 70.0 270 > th dose independent rect. 9 23
179 345.38 precipitation 0.1 14400 < th dose independent rect. 3 15
180 345.38 precipitation 0.1 14400 < th dose dependent rect. 3 15
191 345.52 humidity 90.0 14400 < th dose independent rect. 7 11
202 345.58 humidity 70.0 90 > th dose independent rect. 5 20
203 345.59 precipitation 0.1 14400 > th dose independent rect. 3 15
211 345.71 humidity 90.0 14400 > th dose dependent rect. 16 1
220 345.80 humidity 90.0 14400 > th dose independent rect. 12 10
239 346.13 precipitation 0.1 14400 > th dose dependent sin 2 NA
244 346.17 humidity 90.0 14400 < th dose independent rect. 6 15
283 346.53 humidity 90.0 14400 > th dose independent rect. 15 6
284 346.54 temperature 20.0 14400 > th dose independent rect. 20 1
289 346.55 humidity 70.0 270 < th dose independent rect. 9 11
312 346.57 precipitation 0.1 14400 > th dose dependent rect. 5 15
325 346.63 precipitation 0.1 14400 < th dose independent rect. 13 6
326 346.63 precipitation 0.1 14400 < th dose dependent rect. 13 6
329 346.65 humidity 90.0 14400 > th dose independent sin 22 NA
355 346.83 precipitation 0.1 14400 > th dose independent rect. 1 17
361 346.85 precipitation 0.1 14400 > th dose independent rect. 13 6
434 347.34 precipitation 0.1 14400 < th dose independent rect. 1 19
435 347.34 precipitation 0.1 14400 < th dose dependent rect. 1 19
461 347.53 precipitation 0.1 14400 > th dose independent rect. 1 19
462 347.53 humidity 60.0 90 > th dose dependent rect. 5 20
506 347.82 humidity 70.0 270 > th dose independent rect. 12 23
508 347.84 precipitation 0.1 4320 < th dose independent rect. 4 3
510 347.84 precipitation 0.1 4320 < th dose dependent rect. 4 3
511 347.86 precipitation 0.1 14400 < th dose independent rect. 15 5
515 347.86 precipitation 0.1 14400 < th dose dependent rect. 15 5
518 347.87 humidity 80.0 720 < th dose independent rect. 8 4
538 347.99 precipitation 0.1 14400 < th dose independent rect. 9 11
539 347.99 precipitation 0.1 14400 < th dose dependent rect. 9 11
541 348.00 humidity 70.0 270 > th dose independent sin 20 NA
552 348.08 precipitation 0.1 14400 > th dose independent rect. 15 5
561 348.10 precipitation 0.1 14400 > th dose independent rect. 9 11
614 348.45 humidity 70.0 270 < th dose independent sin 21 NA
641 348.59 humidity 90.0 1440 > th dose dependent rect. 7 7
654 348.68 precipitation 0.1 14400 < th dose independent rect. 17 3
657 348.68 precipitation 0.1 14400 < th dose dependent rect. 17 3
716 349.01 humidity 90.0 1440 > th dose dependent rect. 7 5
719 349.03 humidity 90.0 14400 < th dose independent sin 22 NA
760 349.25 humidity 90.0 1440 > th dose dependent rect. 7 2
763 349.27 humidity 70.0 270 < th dose independent rect. 12 23
774 349.33 precipitation 0.1 14400 < th dose independent sin 0 NA
775 349.33 precipitation 0.1 14400 < th dose dependent sin 0 NA
776 349.37 precipitation 0.1 14400 > th dose independent sin 0 NA
787 349.43 humidity 50.0 270 > th dose dependent rect. 3 21
790 349.45 precipitation 0.1 4320 > th dose independent rect. 5 2
798 349.49 humidity 90.0 270 < th dose dependent rect. 9 11
844 349.80 precipitation 0.1 4320 > th dose dependent rect. 5 2
856 349.86 humidity 90.0 14400 < th dose independent rect. 11 10
935 350.17 precipitation 0.1 14400 > th dose dependent rect. 12 8
938 350.19 precipitation 0.1 14400 > th dose dependent rect. 13 4
954 350.30 wind 5.0 14400 < th dose dependent rect. 3 2
994 350.51 precipitation 0.1 14400 > th dose independent rect. 15 2