Os02g0813000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0813000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.74 | 0.612 | 8.44 | 0.634 | 0.724 | -3 | -0.594 | -5.08 | 0.701 | 10.6 | 0.8301 | 11535 | -- | -- |
| 189.37 | 0.641 | 8.57 | -0.24 | 0.742 | -2.17 | -0.509 | -- | 0.447 | 10.5 | 2.551 | 31066 | -- | -- |
| 170.04 | 0.607 | 8.41 | 0.644 | 0.846 | -3.34 | -- | -5.95 | 0.721 | 10.5 | 0.4943 | 11468 | -- | -- |
| 165.77 | 0.6 | 8.62 | -0.488 | 0.973 | -1.81 | -- | -- | 0.408 | 9.95 | 1.224 | 29877 | -- | -- |
| 192.31 | 0.646 | 8.44 | 0.4 | -- | -3.52 | -- | -5.89 | 0.665 | -- | 0.42 | 13115 | -- | -- |
| 266.03 | 0.765 | 8.49 | 0.53 | 0.705 | -- | -0.629 | -- | 0.973 | 10.4 | -- | -- | -- | -- |
| 267.44 | 0.766 | 8.49 | 0.502 | 0.715 | -- | -- | -- | 0.969 | 10 | -- | -- | -- | -- |
| 183.28 | 0.631 | 8.74 | -1.27 | -- | -2.38 | -- | -- | 0.138 | -- | 0.7002 | 33365 | -- | -- |
| 178.93 | 0.623 | 8.6 | -- | 0.92 | -1.69 | -- | -- | 0.449 | 9.96 | 1.44 | 29877 | -- | -- |
| 298.27 | 0.807 | 8.51 | 0.493 | -- | -- | -- | -- | 0.969 | -- | -- | -- | -- | -- |
| 274.09 | 0.774 | 8.5 | -- | 0.713 | -- | -- | -- | 0.913 | 9.99 | -- | -- | -- | -- |
| 203.8 | 0.665 | 8.63 | -- | -- | -1.98 | -- | -- | 0.397 | -- | 1.44 | 18954 | -- | -- |
| 304.68 | 0.815 | 8.52 | -- | -- | -- | -- | -- | 0.914 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 6 | 149.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 8 | 149.56 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 11 | 150.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 21 | 150.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 25 | 150.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 27 | 150.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 32 | 151.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 33 | 151.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 43 | 152.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 49 | 154.64 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 50 | 154.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 51 | 155.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 52 | 155.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 64 | 155.64 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 65 | 155.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 97 | 156.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 100 | 156.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 111 | 156.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 113 | 156.82 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 132 | 157.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 133 | 157.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 136 | 157.13 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 138 | 157.14 | radiation | 1 | 43200 | < th | dose dependent | sin | 10 | NA |
| 150 | 157.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 17 |
| 155 | 157.43 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 157 | 157.44 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 158 | 157.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 160 | 157.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 237 | 157.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 276 | 158.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 298 | 158.10 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 310 | 158.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 325 | 158.25 | humidity | 90 | 43200 | > th | dose dependent | sin | 6 | NA |
| 343 | 158.37 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 366 | 158.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 392 | 158.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 10 |
| 458 | 158.73 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 471 | 158.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 488 | 158.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 491 | 158.88 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 505 | 158.96 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 524 | 159.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 542 | 159.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 549 | 159.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 551 | 159.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 556 | 159.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 586 | 159.16 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 608 | 159.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 611 | 159.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 612 | 159.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 665 | 159.30 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 676 | 159.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 677 | 159.32 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 715 | 159.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 744 | 159.54 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 763 | 159.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 776 | 159.68 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 805 | 159.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 837 | 159.89 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 888 | 160.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 903 | 160.13 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 933 | 160.23 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 1000 | 160.42 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 2 |