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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0811800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0373) R2 : 0.000323
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0301 (0.0785) R2dN8 : 0.000417 R2N8 : 0.000323
σ : 0.702
deviance : 226.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.69 0.695 3.04 1.18 0.0496 0.8 -0.53 -5.03 0.0876 8.94 29.96 1219 -- --
218.59 0.694 3.13 0.234 0.162 0.302 -0.474 -- 0.15 10.1 22.9 2212 -- --
219.53 0.69 3.04 1.16 0.0718 0.807 -- -5.07 0.0851 6.31 30 1219 -- --
219.43 0.69 3.12 0.255 0.0465 0.4 -- -- 0.204 9.84 23 2217 -- --
219.79 0.69 3.04 1.21 -- 0.83 -- -5.28 0.0908 -- 30 1213 -- --
224.6 0.703 3.16 0.112 0.0891 -- -0.552 -- 0.0404 9.16 -- -- -- --
225.65 0.703 3.16 0.0914 0.0948 -- -- -- 0.0393 8.39 -- -- -- --
219.55 0.69 3.12 0.256 -- 0.405 -- -- 0.206 -- 23 2217 -- --
220.64 0.696 3.14 -- 0.155 0.274 -- -- 0.116 10.2 23 2217 -- --
226.15 0.703 3.16 0.0919 -- -- -- -- 0.0403 -- -- -- -- --
225.87 0.703 3.16 -- 0.0953 -- -- -- 0.0292 8.32 -- -- -- --
221.09 0.693 3.13 -- -- 0.344 -- -- 0.155 -- 22.93 2217 -- --
226.38 0.702 3.16 -- -- -- -- -- 0.0301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.94 wind 1.0 10 < th dose dependent rect. 2 1
2 207.13 wind 1.0 10 < th dose independent rect. 1 2
17 214.08 radiation 1.0 43200 < th dose dependent rect. 19 1
18 214.33 atmosphere 1005.0 90 > th dose dependent rect. 1 2
19 214.34 temperature 20.0 90 > th dose independent rect. 3 8
21 214.48 temperature 20.0 10 < th dose independent rect. 5 4
29 214.66 temperature 20.0 10 < th dose independent rect. 5 12
34 214.74 temperature 20.0 10 < th dose independent rect. 1 16
39 214.95 temperature 20.0 10 > th dose independent sin 3 NA
66 215.42 humidity 90.0 30 > th dose dependent rect. 2 1
75 215.50 temperature 25.0 30 < th dose dependent rect. 24 17
89 215.75 temperature 20.0 10 < th dose independent sin 2 NA
90 215.75 atmosphere 1005.0 10 > th dose independent rect. 2 1
91 215.77 temperature 20.0 270 > th dose independent rect. 3 6
97 215.80 radiation 10.0 1440 < th dose independent rect. 17 13
104 215.88 temperature 20.0 10 < th dose independent rect. 5 1
110 215.89 wind 5.0 4320 < th dose independent rect. 20 4
115 215.96 precipitation 0.1 14400 > th dose dependent rect. 21 2
117 216.01 precipitation 0.1 14400 < th dose independent rect. 21 2
118 216.01 wind 5.0 4320 > th dose independent rect. 20 4
119 216.01 precipitation 0.1 14400 < th dose dependent rect. 21 2
121 216.03 temperature 20.0 10 < th dose independent rect. 1 8
128 216.10 precipitation 0.1 14400 > th dose independent rect. 21 2
148 216.32 precipitation 0.1 14400 < th dose independent rect. 20 5
149 216.32 precipitation 0.1 14400 < th dose dependent rect. 20 5
157 216.35 humidity 90.0 720 < th dose dependent rect. 4 1
158 216.36 atmosphere 1005.0 30 > th dose dependent rect. 1 5
159 216.37 temperature 30.0 720 < th dose independent rect. 18 1
162 216.37 temperature 20.0 10 > th dose dependent rect. 20 15
163 216.38 precipitation 0.1 14400 > th dose independent rect. 20 5
166 216.38 temperature 25.0 30 < th dose dependent rect. 2 1
173 216.40 temperature 20.0 10 < th dose dependent rect. 6 2
193 216.50 temperature 20.0 10 < th dose dependent rect. 5 4
213 216.58 radiation 10.0 1440 < th dose independent rect. 17 4
231 216.72 radiation 10.0 1440 < th dose independent rect. 17 7
232 216.72 temperature 20.0 30 > th dose independent rect. 3 23
247 216.82 wind 5.0 4320 > th dose dependent rect. 21 3
265 216.89 humidity 70.0 720 > th dose independent rect. 18 1
267 216.90 temperature 20.0 10 < th dose independent rect. 2 1
273 216.92 humidity 90.0 10 > th dose independent rect. 2 1
280 216.94 precipitation 0.1 90 > th dose independent rect. 22 3
283 216.94 precipitation 0.1 90 > th dose dependent rect. 22 3
284 216.95 temperature 20.0 10 > th dose dependent rect. 23 12
291 216.98 atmosphere 1005.0 30 > th dose dependent rect. 18 1
297 217.01 wind 5.0 14400 < th dose independent rect. 11 1
299 217.01 wind 9.0 43200 > th dose independent rect. 16 16
300 217.03 wind 1.0 43200 < th dose dependent rect. 9 1
312 217.08 humidity 80.0 720 > th dose independent rect. 23 8
318 217.10 wind 5.0 4320 < th dose independent rect. 20 1
324 217.11 temperature 20.0 10 > th dose dependent rect. 4 7
334 217.13 radiation 30.0 14400 < th dose independent rect. 16 14
339 217.15 wind 5.0 43200 < th dose independent rect. 22 3
340 217.15 wind 9.0 30 < th dose independent rect. 3 23
343 217.16 temperature 25.0 90 > th dose independent rect. 2 1
358 217.19 wind 9.0 43200 < th dose independent rect. 16 16
362 217.20 radiation 20.0 720 < th dose independent rect. 23 8
364 217.21 radiation 30.0 14400 < th dose independent rect. 16 12
368 217.22 radiation 30.0 14400 < th dose independent rect. 16 4
372 217.23 temperature 30.0 30 < th dose independent rect. 18 1
386 217.24 wind 9.0 43200 > th dose dependent rect. 16 15
387 217.25 radiation 30.0 14400 < th dose independent rect. 16 1
396 217.26 humidity 50.0 30 > th dose dependent rect. 18 1
397 217.27 wind 3.0 10 > th dose dependent rect. 24 1
415 217.31 wind 5.0 43200 > th dose independent rect. 22 3
416 217.31 temperature 30.0 720 < th dose independent rect. 15 8
419 217.31 wind 5.0 4320 > th dose dependent rect. 20 7
420 217.32 temperature 25.0 30 < th dose dependent rect. 5 12
431 217.34 radiation 10.0 1440 > th dose dependent rect. 17 13
432 217.35 humidity 70.0 30 > th dose independent rect. 18 1
443 217.38 wind 1.0 43200 > th dose independent rect. 9 1
444 217.38 wind 5.0 10 > th dose independent rect. 24 2
448 217.38 radiation 30.0 14400 < th dose independent rect. 16 8
452 217.38 wind 5.0 43200 > th dose dependent sin 11 NA
468 217.40 wind 7.0 43200 < th dose independent rect. 18 16
473 217.40 radiation 10.0 1440 > th dose dependent rect. 17 1
488 217.41 wind 5.0 14400 > th dose independent rect. 11 1
490 217.41 temperature 25.0 30 < th dose dependent sin 3 NA
492 217.42 wind 5.0 10 > th dose independent rect. 24 6
505 217.44 wind 9.0 10 < th dose independent rect. 2 1
506 217.44 temperature 10.0 10 > th dose independent rect. 2 1
509 217.44 humidity 50.0 10 > th dose independent rect. 2 1
513 217.44 atmosphere 1010.0 10 < th dose independent rect. 2 1
515 217.44 radiation 1.0 10 < th dose independent rect. 2 1
520 217.44 precipitation 0.1 10 < th dose independent rect. 2 1
526 217.44 temperature 10.0 10 > th dose independent rect. 3 23
527 217.44 radiation 1.0 10 < th dose dependent rect. 2 1
533 217.44 precipitation 0.1 10 < th dose dependent rect. 2 1
540 217.46 wind 5.0 4320 > th dose independent rect. 20 1
554 217.47 wind 5.0 30 > th dose dependent rect. 24 6
559 217.48 wind 7.0 43200 < th dose independent sin 11 NA
569 217.49 wind 1.0 43200 < th dose independent rect. 9 1
590 217.52 wind 7.0 43200 > th dose independent sin 11 NA
597 217.52 temperature 20.0 10 > th dose dependent rect. 14 21
601 217.53 wind 5.0 43200 > th dose independent rect. 23 1
620 217.55 wind 5.0 43200 > th dose dependent rect. 18 11
622 217.55 radiation 20.0 14400 > th dose dependent rect. 17 14
625 217.56 temperature 10.0 1440 > th dose independent rect. 19 1
632 217.56 humidity 50.0 1440 > th dose independent rect. 19 1
634 217.56 atmosphere 995.0 1440 > th dose independent rect. 19 1
638 217.56 radiation 1.0 1440 < th dose independent rect. 19 1
658 217.56 temperature 10.0 1440 > th dose independent rect. 20 23
663 217.56 radiation 20.0 14400 > th dose dependent rect. 6 1
686 217.57 wind 5.0 43200 > th dose independent rect. 19 8
687 217.57 wind 5.0 43200 < th dose independent rect. 19 8
692 217.57 temperature 20.0 1440 > th dose dependent rect. 21 1
708 217.60 humidity 80.0 4320 > th dose independent rect. 11 1
715 217.60 wind 5.0 43200 > th dose dependent rect. 20 7
722 217.61 humidity 50.0 4320 < th dose independent rect. 15 2
724 217.61 radiation 30.0 1440 < th dose independent rect. 16 16
730 217.63 humidity 80.0 4320 < th dose independent rect. 11 1
735 217.63 radiation 1.0 720 < th dose dependent rect. 18 9
739 217.64 wind 5.0 43200 < th dose independent rect. 23 1
748 217.64 temperature 20.0 720 > th dose dependent rect. 12 19
750 217.65 radiation 1.0 30 < th dose independent rect. 18 1
754 217.65 wind 7.0 43200 < th dose independent rect. 20 12
756 217.65 wind 7.0 43200 > th dose independent rect. 20 13
758 217.65 temperature 20.0 10 > th dose independent rect. 19 23
764 217.66 atmosphere 1005.0 30 > th dose independent rect. 18 1
794 217.68 temperature 20.0 1440 > th dose dependent rect. 5 1
802 217.68 wind 5.0 10 > th dose dependent rect. 22 3
812 217.69 wind 1.0 30 > th dose dependent rect. 18 1
818 217.70 wind 3.0 4320 < th dose independent rect. 6 1
820 217.70 wind 5.0 43200 > th dose independent rect. 18 11
834 217.71 humidity 70.0 1440 > th dose dependent rect. 2 1
837 217.71 temperature 10.0 720 > th dose dependent rect. 12 19
848 217.72 temperature 10.0 1440 > th dose dependent rect. 21 1
861 217.73 temperature 20.0 270 > th dose independent rect. 3 19
872 217.74 temperature 20.0 10 > th dose independent rect. 24 11
894 217.76 radiation 1.0 30 < th dose dependent rect. 18 1
895 217.76 wind 9.0 43200 > th dose dependent rect. 16 8
912 217.78 wind 7.0 14400 > th dose independent rect. 5 5
917 217.78 temperature 30.0 1440 < th dose dependent rect. 21 1
958 217.81 temperature 10.0 720 > th dose dependent rect. 12 12
974 217.83 humidity 80.0 30 < th dose independent rect. 18 1
986 217.84 temperature 20.0 10 > th dose independent rect. 20 15
995 217.85 atmosphere 1000.0 10 < th dose independent rect. 5 1