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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0811400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0269) R2 : 0.241
β1 : -0.171 (0.109) R2dD : 0.0062 R2D : -0.0317
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.45 (0.391) R2dE : 0.428 R2E : -0.47
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -38.3 (3.42) R2dD*E : 0.734 R2D*E : -0.187
γ1 : 0.0733 (0.0567) R2dN8 : 0.00419 R2N8 : -0.0111
σ : 0.495
deviance : 112.97
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 74.89
memory length : 29
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 13.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.46 0.496 3.23 -0.147 0.12 3.19 0.575 -36.3 0.0719 14.7 76.01 28 18.4 4.85
137.92 0.547 3.17 0.369 0.143 1.2 0.573 -- 0.051 11.7 83 86 19.6 3
112.2 0.493 3.23 -0.147 0.124 3.23 -- -36.5 0.0696 14.5 75.09 32 18.4 7.68
139.28 0.55 3.17 0.393 0.156 1.1 -- -- 0.0745 12.2 83 87 19.6 3.32
112.97 0.495 3.23 -0.171 -- 3.45 -- -38.3 0.0733 -- 74.89 29 18.4 13.1
143.04 0.561 3.18 0.339 0.0903 -- 0.638 -- 0.0549 12.1 -- -- -- --
144.52 0.563 3.18 0.367 0.116 -- -- -- 0.0596 14.8 -- -- -- --
140.58 0.552 3.17 0.382 -- 1.08 -- -- 0.0841 -- 82.27 88 19.7 3.12
143.31 0.558 3.17 -- 0.136 1.07 -- -- 0.0557 12.2 82.33 88 19.6 3.28
145.29 0.563 3.18 0.362 -- -- -- -- 0.0566 -- -- -- -- --
148.06 0.569 3.18 -- 0.108 -- -- -- 0.0187 14.8 -- -- -- --
144.45 0.56 3.18 -- -- 1.01 -- -- 0.0467 -- 82 89 19.6 2.95
148.74 0.569 3.18 -- -- -- -- -- 0.0165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.34 humidity 80.0 30 < th dose dependent rect. 18 4
9 117.47 humidity 80.0 30 < th dose dependent rect. 18 2
16 118.20 humidity 80.0 30 < th dose dependent rect. 18 12
80 125.38 radiation 20.0 270 > th dose dependent rect. 16 1
102 127.11 humidity 80.0 90 < th dose independent rect. 18 2
109 127.96 humidity 60.0 270 < th dose independent rect. 16 1
111 128.04 humidity 60.0 270 < th dose independent rect. 16 3
129 128.59 humidity 60.0 270 < th dose dependent rect. 16 1
133 128.72 humidity 60.0 270 < th dose dependent rect. 16 3
161 129.98 atmosphere 1005.0 90 < th dose independent rect. 18 1
197 131.31 radiation 20.0 270 > th dose independent rect. 16 1
223 131.70 humidity 80.0 30 < th dose independent rect. 18 12
243 131.89 atmosphere 1000.0 10 < th dose independent rect. 21 1
250 131.89 atmosphere 1000.0 10 < th dose dependent rect. 21 1
279 132.17 atmosphere 1010.0 90 < th dose dependent rect. 18 1
284 132.31 wind 3.0 30 > th dose independent rect. 18 2
295 132.42 temperature 25.0 10 > th dose dependent rect. 21 2
388 133.72 temperature 20.0 10 > th dose independent rect. 18 2
413 133.93 wind 9.0 270 > th dose dependent rect. 18 1
442 134.11 atmosphere 1005.0 270 < th dose dependent rect. 16 3
446 134.14 wind 1.0 30 > th dose dependent rect. 18 2
447 134.16 wind 3.0 720 > th dose independent rect. 8 5
452 134.21 atmosphere 1005.0 270 < th dose dependent rect. 16 1
461 134.30 humidity 80.0 30 < th dose dependent sin 12 NA
470 134.40 wind 3.0 1440 < th dose dependent rect. 8 4
474 134.44 wind 3.0 1440 < th dose independent rect. 9 4
481 134.49 wind 3.0 1440 > th dose independent rect. 9 1
496 134.57 wind 9.0 270 > th dose independent rect. 18 1
498 134.57 temperature 30.0 90 < th dose independent rect. 20 22
508 134.61 wind 7.0 30 < th dose independent rect. 18 2
510 134.61 temperature 30.0 90 < th dose dependent rect. 18 1
528 134.70 wind 9.0 10 < th dose independent rect. 20 22
529 134.71 wind 3.0 1440 < th dose independent rect. 9 1
530 134.71 radiation 1.0 14400 < th dose dependent rect. 19 3
542 134.80 radiation 30.0 720 < th dose independent rect. 15 17
554 134.89 temperature 25.0 90 < th dose independent rect. 18 3
563 134.94 temperature 10.0 30 > th dose dependent rect. 20 22
604 135.11 radiation 40.0 720 > th dose dependent rect. 15 1
627 135.15 precipitation 0.1 30 < th dose independent rect. 18 2
630 135.15 precipitation 0.1 30 < th dose dependent rect. 18 2
635 135.18 atmosphere 995.0 10 > th dose independent rect. 20 22
682 135.31 radiation 10.0 10 < th dose independent rect. 18 2
687 135.33 temperature 10.0 10 > th dose independent rect. 18 2
689 135.33 humidity 50.0 10 > th dose independent rect. 18 2
695 135.33 temperature 10.0 10 > th dose independent rect. 20 22
696 135.33 radiation 40.0 10 < th dose dependent rect. 18 2
697 135.34 wind 9.0 270 > th dose independent rect. 18 8
706 135.34 radiation 20.0 10 < th dose dependent rect. 18 2
710 135.35 atmosphere 995.0 10 > th dose independent rect. 18 2
752 135.43 temperature 25.0 10 < th dose independent rect. 20 1
772 135.49 humidity 70.0 30 > th dose independent rect. 18 2
820 135.56 humidity 80.0 30 < th dose independent sin 13 NA
824 135.57 temperature 10.0 1440 > th dose independent rect. 19 2
827 135.57 temperature 30.0 1440 < th dose independent rect. 19 2
831 135.57 humidity 50.0 1440 > th dose independent rect. 19 2
833 135.57 atmosphere 995.0 1440 > th dose independent rect. 19 2
837 135.57 radiation 1.0 1440 < th dose independent rect. 19 2
857 135.57 temperature 10.0 1440 > th dose independent rect. 21 22
860 135.57 precipitation 0.1 30 < th dose independent rect. 20 22
861 135.57 radiation 1.0 1440 < th dose dependent rect. 19 2
871 135.57 precipitation 0.1 30 < th dose dependent rect. 20 22
927 135.65 temperature 10.0 10 > th dose dependent rect. 7 11
937 135.67 wind 1.0 720 > th dose independent rect. 8 12