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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0809300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0194) R2 : 0.00734
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0749 (0.0408) R2dN8 : 0.00948 R2N8 : 0.00734
σ : 0.365
deviance : 61.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.86 0.357 2.94 -0.00694 0.0497 2.84 -0.0787 -6.85 0.0989 2.13 50.01 77 -- --
59.45 0.359 2.91 0.0946 0.0653 0.39 -0.0676 -- 0.113 1.15 54.99 90 -- --
57.64 0.354 2.96 -0.0601 0.0426 5.36 -- -13.3 0.0722 2.34 49 77 -- --
59.4 0.359 2.91 0.0804 0.0543 0.432 -- -- 0.098 0.91 53.9 90 -- --
57.67 0.354 2.96 -0.0537 -- 5.54 -- -13.6 0.101 -- 49 78 -- --
60.59 0.365 2.92 0.108 0.0364 -- -0.0857 -- 0.0867 23.3 -- -- -- --
60.61 0.365 2.92 0.112 0.0405 -- -- -- 0.0874 21.7 -- -- -- --
59.58 0.359 2.91 0.0827 -- 0.42 -- -- 0.0975 -- 53.33 90 -- --
59.57 0.359 2.92 -- 0.056 0.475 -- -- 0.0895 1.03 53.32 90 -- --
60.71 0.364 2.92 0.112 -- -- -- -- 0.0873 -- -- -- -- --
60.94 0.365 2.92 -- 0.0408 -- -- -- 0.0749 21.9 -- -- -- --
59.75 0.36 2.92 -- -- 0.456 -- -- 0.0886 -- 53 90 -- --
61.04 0.365 2.92 -- -- -- -- -- 0.0749 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.58 wind 9.0 1440 < th dose independent rect. 23 1
2 43.58 temperature 10.0 1440 > th dose independent rect. 23 1
5 43.58 temperature 30.0 1440 < th dose independent rect. 23 1
9 43.58 humidity 50.0 1440 > th dose independent rect. 23 1
19 43.58 atmosphere 995.0 1440 > th dose independent rect. 23 1
20 43.58 radiation 1.0 1440 < th dose independent rect. 23 1
40 43.58 temperature 10.0 1440 > th dose independent rect. 24 23
43 43.58 radiation 1.0 1440 < th dose dependent rect. 23 1
48 43.69 humidity 90.0 30 < th dose independent rect. 22 1
50 43.71 temperature 25.0 30 > th dose independent rect. 22 1
51 43.72 atmosphere 1005.0 30 > th dose dependent rect. 22 1
52 43.77 temperature 20.0 30 > th dose dependent rect. 22 1
56 43.83 atmosphere 1005.0 30 > th dose independent rect. 22 1
60 43.92 precipitation 0.1 30 < th dose independent rect. 22 1
62 43.92 precipitation 0.1 30 < th dose dependent rect. 22 1
63 43.94 wind 1.0 30 > th dose independent rect. 22 1
66 43.98 wind 3.0 30 < th dose independent rect. 22 1
70 43.98 temperature 10.0 30 > th dose independent rect. 22 1
72 43.98 temperature 30.0 30 < th dose independent rect. 22 1
73 43.98 humidity 50.0 30 > th dose independent rect. 22 1
78 43.98 atmosphere 1010.0 30 < th dose independent rect. 22 1
80 43.98 radiation 1.0 30 < th dose independent rect. 22 1
85 43.98 temperature 10.0 30 > th dose independent rect. 23 23
86 43.98 radiation 1.0 30 < th dose dependent rect. 22 1
91 44.00 wind 9.0 30 < th dose dependent rect. 22 1
92 44.00 humidity 90.0 30 < th dose dependent rect. 22 1
96 44.08 humidity 50.0 30 > th dose dependent rect. 22 1
98 44.19 wind 1.0 30 > th dose dependent rect. 22 1
101 44.50 atmosphere 1015.0 30 < th dose dependent rect. 22 1
103 44.71 wind 9.0 30 < th dose independent rect. 23 23
105 44.74 temperature 30.0 30 < th dose dependent rect. 22 1
171 50.30 humidity 50.0 30 > th dose independent rect. 23 23
174 51.55 precipitation 0.1 30 < th dose independent rect. 23 23
175 51.55 precipitation 0.1 30 < th dose dependent rect. 23 23
177 51.81 atmosphere 995.0 30 > th dose independent rect. 23 23
184 53.02 humidity 50.0 30 < th dose dependent rect. 17 19
186 53.06 humidity 50.0 30 < th dose independent rect. 17 19
190 53.13 humidity 50.0 30 < th dose dependent rect. 17 1
208 53.17 humidity 50.0 30 < th dose independent rect. 17 1
226 53.24 radiation 10.0 30 > th dose independent rect. 17 1
242 53.39 precipitation 0.1 1440 < th dose independent rect. 23 1
244 53.39 precipitation 0.1 1440 < th dose dependent rect. 23 1
246 53.60 radiation 10.0 30 > th dose dependent rect. 17 1
269 54.23 atmosphere 1015.0 30 < th dose independent rect. 23 23
275 54.58 radiation 10.0 30 < th dose dependent rect. 23 23
301 55.73 temperature 30.0 30 < th dose independent rect. 23 23
365 56.13 humidity 50.0 30 < th dose independent sin 8 NA
374 56.23 humidity 50.0 30 > th dose dependent rect. 23 23
394 56.39 radiation 1.0 30 < th dose independent rect. 23 23
458 56.69 temperature 15.0 720 > th dose independent rect. 11 16
460 56.72 wind 9.0 720 < th dose independent rect. 3 8
463 56.73 temperature 30.0 30 > th dose dependent rect. 17 1
464 56.74 temperature 10.0 720 > th dose independent rect. 3 8
465 56.74 atmosphere 995.0 720 > th dose independent rect. 3 8
466 56.74 atmosphere 1015.0 720 < th dose independent rect. 3 8
477 56.88 radiation 40.0 720 < th dose independent rect. 15 8
480 56.91 temperature 15.0 720 > th dose independent rect. 15 8
483 56.92 temperature 10.0 720 > th dose independent rect. 23 16
497 57.09 wind 9.0 30 < th dose dependent rect. 23 23
505 57.22 wind 9.0 720 < th dose independent rect. 15 8
513 57.31 humidity 50.0 30 > th dose independent sin 10 NA
515 57.31 humidity 50.0 30 < th dose dependent sin 8 NA
563 57.42 temperature 25.0 90 > th dose dependent rect. 21 9
582 57.47 wind 1.0 30 > th dose independent rect. 23 23
584 57.48 wind 9.0 720 < th dose independent rect. 23 16
585 57.49 temperature 25.0 90 > th dose dependent rect. 21 6
617 57.56 wind 9.0 720 < th dose independent rect. 11 16
620 57.58 humidity 50.0 720 > th dose independent rect. 3 8
680 57.74 humidity 50.0 90 > th dose independent rect. 13 8
693 57.80 temperature 30.0 90 > th dose independent rect. 16 1
703 57.85 humidity 60.0 10 > th dose independent rect. 14 8
708 57.87 temperature 10.0 30 > th dose dependent rect. 23 23
762 57.93 humidity 50.0 90 < th dose dependent sin 19 NA
772 57.93 humidity 50.0 90 < th dose dependent rect. 14 22
776 57.94 humidity 50.0 90 < th dose dependent sin 16 NA
781 57.94 humidity 50.0 90 < th dose dependent no NA NA
784 57.94 humidity 50.0 90 < th dose dependent rect. 11 7