Os02g0808800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
FiT-DB / Search/ Help/ Sample detail
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Os02g0808800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.84 | 0.474 | 3.38 | -0.936 | 0.32 | -0.83 | -0.0263 | 4.46 | -0.432 | 6.56 | 19.99 | 376 | -- | -- |
| 130.64 | 0.532 | 3.35 | -0.873 | 0.327 | -0.918 | 2.43 | -- | -0.374 | 3.79 | 19.26 | 329 | -- | -- |
| 101.84 | 0.47 | 3.38 | -0.936 | 0.319 | -0.828 | -- | 4.45 | -0.432 | 6.59 | 19.99 | 375 | -- | -- |
| 145.22 | 0.561 | 3.38 | -0.886 | 0.34 | -0.823 | -- | -- | -0.408 | 6.62 | 19.99 | 370 | -- | -- |
| 105.73 | 0.479 | 3.39 | -0.925 | -- | -0.642 | -- | 4.5 | -0.41 | -- | 20 | 373 | -- | -- |
| 141.36 | 0.557 | 3.36 | -0.793 | 0.393 | -- | -2.21 | -- | -0.306 | 14.4 | -- | -- | -- | -- |
| 157.85 | 0.588 | 3.37 | -0.855 | 0.407 | -- | -- | -- | -0.321 | 12.8 | -- | -- | -- | -- |
| 149.12 | 0.569 | 3.38 | -0.9 | -- | -0.65 | -- | -- | -0.417 | -- | 19.99 | 315 | -- | -- |
| 166.19 | 0.6 | 3.38 | -- | 0.348 | -0.85 | -- | -- | -0.327 | 6.59 | 19.99 | 369 | -- | -- |
| 168.19 | 0.606 | 3.37 | -0.87 | -- | -- | -- | -- | -0.328 | -- | -- | -- | -- | -- |
| 177.13 | 0.623 | 3.34 | -- | 0.42 | -- | -- | -- | -0.225 | 12.9 | -- | -- | -- | -- |
| 164.37 | 0.597 | 3.37 | -- | -- | -0.818 | -- | -- | -0.28 | -- | 29.95 | 169 | -- | -- |
| 188.16 | 0.64 | 3.35 | -- | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.05 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 4 | 96.40 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 9 | 96.64 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 13 | 97.10 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 16 | 97.27 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 20 | 97.60 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 28 | 98.93 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 31 | 99.16 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 39 | 99.77 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 47 | 100.16 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 114 | 102.30 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 145 | 103.81 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 187 | 105.21 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 256 | 107.46 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 258 | 107.54 | radiation | 20 | 270 | < th | dose independent | sin | 21 | NA |
| 261 | 107.66 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 270 | 108.05 | radiation | 20 | 720 | < th | dose independent | rect. | 22 | 15 |
| 283 | 108.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 288 | 108.73 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 23 |
| 294 | 108.89 | radiation | 1 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 303 | 109.15 | radiation | 1 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 315 | 109.17 | radiation | 1 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 344 | 109.43 | radiation | 40 | 270 | < th | dose independent | sin | 17 | NA |
| 345 | 109.44 | radiation | 20 | 270 | < th | dose independent | rect. | 16 | 23 |
| 370 | 109.75 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 379 | 109.86 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 385 | 109.94 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 391 | 110.13 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 395 | 110.19 | radiation | 20 | 720 | < th | dose independent | rect. | 16 | 21 |
| 406 | 110.41 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 421 | 110.53 | radiation | 40 | 270 | > th | dose dependent | sin | 16 | NA |
| 444 | 110.77 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 13 |
| 449 | 110.82 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 15 |
| 450 | 110.85 | radiation | 10 | 720 | < th | dose independent | sin | 6 | NA |
| 453 | 110.90 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 13 |
| 486 | 111.14 | radiation | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 506 | 111.37 | temperature | 10 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 513 | 111.46 | radiation | 20 | 720 | < th | dose independent | rect. | 7 | 6 |
| 515 | 111.49 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 576 | 111.94 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 595 | 112.25 | radiation | 1 | 270 | > th | dose dependent | sin | 21 | NA |
| 597 | 112.27 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 616 | 112.53 | radiation | 20 | 720 | < th | dose independent | rect. | 3 | 10 |
| 635 | 112.75 | radiation | 20 | 270 | < th | dose independent | rect. | 20 | 23 |
| 649 | 112.96 | radiation | 40 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 672 | 113.02 | radiation | 10 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 684 | 113.21 | radiation | 20 | 720 | < th | dose independent | rect. | 1 | 12 |
| 687 | 113.23 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 7 |
| 739 | 113.42 | humidity | 70 | 90 | < th | dose dependent | rect. | 11 | 5 |
| 751 | 113.50 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 2 |
| 761 | 113.59 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 779 | 113.68 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 4 | 3 |
| 790 | 113.78 | temperature | 10 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 795 | 113.80 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 9 |
| 824 | 113.83 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 7 |
| 833 | 113.89 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 843 | 113.92 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 867 | 114.08 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 896 | 114.11 | radiation | 10 | 1440 | < th | dose independent | sin | 13 | NA |
| 899 | 114.12 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 907 | 114.15 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 931 | 114.24 | radiation | 10 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 948 | 114.36 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 951 | 114.38 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 963 | 114.41 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 5 |