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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0808300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0492) R2 : 0.303
β1 : -1.05 (0.198) R2dD : 0.0576 R2D : 0.135
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.44 (0.167) R2dE : 0.18 R2E : 0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0938 (0.119) R2dN8 : 0.00117 R2N8 : -0.00935
σ : 0.879
deviance : 356.2
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.1
memory length : 5054
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
343.37 0.871 3.23 -0.164 0.264 1.54 -1.23 -4.33 0.0598 9.67 26.3 4739 -- --
348.46 0.869 3.3 -0.639 0.317 1.69 -1.67 -- 0.138 8.96 21.07 5067 -- --
348.83 0.87 3.23 -0.206 0.282 1.53 -- -4.37 0.055 8.9 26.33 4735 -- --
352.22 0.874 3.32 -0.862 0.323 1.62 -- -- 0.0326 8.16 21.09 5072 -- --
353.11 0.875 3.24 -0.171 -- 1.55 -- -4.5 0.0404 -- 26.47 4790 -- --
399.27 0.937 3.43 -1.84 0.341 -- -1.21 -- -0.478 9.25 -- -- -- --
404.33 0.942 3.43 -1.89 0.355 -- -- -- -0.48 8.66 -- -- -- --
356.2 0.879 3.32 -1.05 -- 1.44 -- -- 0.0938 -- 22.1 5054 -- --
364.84 0.89 3.27 -- 0.302 2.08 -- -- 0.241 8.31 21.1 5177 -- --
411.44 0.948 3.44 -1.88 -- -- -- -- -0.477 -- -- -- -- --
497.99 1.04 3.39 -- 0.351 -- -- -- -0.27 9.07 -- -- -- --
370.01 0.896 3.28 -- -- 2.11 -- -- 0.256 -- 21 5179 -- --
505.09 1.05 3.4 -- -- -- -- -- -0.268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 335.54 radiation 40 43200 < th dose independent rect. 15 1
3 335.62 radiation 40 43200 < th dose independent rect. 15 16
7 335.68 radiation 40 43200 < th dose independent rect. 15 10
9 335.69 radiation 30 43200 < th dose independent rect. 16 13
19 335.76 temperature 15 43200 > th dose independent rect. 23 1
20 335.76 radiation 40 43200 < th dose independent rect. 15 5
28 335.84 temperature 15 43200 < th dose independent rect. 23 1
33 336.05 temperature 15 43200 > th dose independent rect. 3 1
34 336.09 radiation 1 43200 > th dose dependent rect. 18 11
41 336.38 temperature 15 43200 > th dose independent rect. 23 6
42 336.41 temperature 15 43200 < th dose independent rect. 23 6
44 336.46 temperature 15 43200 > th dose independent rect. 1 4
56 336.60 temperature 15 43200 < th dose independent rect. 1 4
123 336.99 temperature 15 43200 > th dose independent sin 9 NA
131 337.00 radiation 20 43200 < th dose dependent rect. 22 7
137 337.02 radiation 30 43200 > th dose dependent rect. 7 1
152 337.03 temperature 25 4320 > th dose independent rect. 9 2
167 337.07 radiation 20 43200 < th dose dependent rect. 3 2
179 337.12 radiation 1 43200 > th dose dependent rect. 18 1
219 337.23 radiation 1 43200 > th dose independent rect. 9 2
220 337.23 radiation 40 43200 < th dose independent rect. 22 10
226 337.24 radiation 40 43200 < th dose independent rect. 19 13
234 337.26 radiation 20 43200 < th dose dependent rect. 19 10
235 337.27 radiation 40 43200 < th dose independent rect. 24 8
261 337.34 radiation 1 43200 < th dose independent rect. 9 2
269 337.37 temperature 15 43200 < th dose independent sin 9 NA
270 337.37 radiation 40 43200 < th dose independent rect. 5 3
318 337.47 temperature 25 90 > th dose independent rect. 24 21
321 337.48 radiation 1 43200 < th dose dependent rect. 9 2
375 337.64 temperature 25 4320 < th dose independent rect. 9 2
381 337.64 radiation 10 43200 < th dose independent rect. 22 7
394 337.68 humidity 90 43200 < th dose independent rect. 23 1
425 337.77 radiation 10 43200 < th dose independent rect. 19 10
540 338.03 radiation 20 43200 < th dose independent rect. 6 1
562 338.07 radiation 10 43200 < th dose independent rect. 3 2
588 338.12 radiation 1 43200 > th dose independent rect. 4 1
604 338.12 radiation 1 43200 > th dose dependent rect. 4 1
637 338.16 humidity 90 43200 < th dose independent rect. 10 17
653 338.22 temperature 15 43200 > th dose independent no NA NA
739 338.48 temperature 15 43200 > th dose independent rect. 4 23
825 338.70 atmosphere 1010 14400 > th dose dependent rect. 8 1
842 338.74 humidity 90 43200 > th dose independent rect. 10 16
861 338.80 humidity 90 43200 < th dose independent rect. 14 12
884 338.83 temperature 15 43200 < th dose independent no NA NA
905 338.90 humidity 90 43200 < th dose independent sin 17 NA
922 338.97 temperature 25 90 > th dose independent rect. 3 18
961 339.07 temperature 15 43200 < th dose independent rect. 4 23
966 339.08 temperature 10 10 > th dose dependent rect. 23 23
998 339.16 humidity 90 43200 < th dose independent rect. 18 7