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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0807900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine threonine kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.39 (0.0841) R2 : 0.555
β1 : -6.38 (0.309) R2dD : 0.438 R2D : 0.304
β2 : 1.85 (0.216) R2dC : 0.0723 R2C : 0.042
β3 : 2.58 (0.26) R2dE : 0.102 R2E : 0.0522
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.22 (0.182) R2dN8 : 0.0608 R2N8 : 0.018
σ : 1.57
deviance : 1133.09
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_____
C
peak time of C : 4.53
E
wheather : humidity
threshold : 74.05
memory length : 1685
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.37
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1131.05 1.58 5.4 -6.44 1.86 2.62 -0.861 -0.471 -1.23 4.46 74.22 1675 5.3 --
1131.33 1.57 5.39 -6.4 1.85 2.59 -0.815 -- -1.22 4.47 74.06 1675 5.34 --
1132.96 1.57 5.39 -6.42 1.86 2.61 -- -0.349 -1.23 4.52 74.27 1681 5.34 --
1133.09 1.57 5.39 -6.38 1.85 2.58 -- -- -1.22 4.53 74.05 1685 5.37 --
1198.72 1.61 5.4 -6.35 -- 2.93 -- 0.189 -1.2 -- 76.45 1136 7.2 --
1375.11 1.74 5.47 -6.05 1.78 -- -0.143 -- -1.55 4.14 -- -- -- --
1375.17 1.74 5.47 -6.05 1.78 -- -- -- -1.55 4.15 -- -- -- --
1198.29 1.61 5.4 -6.37 -- 3.02 -- -- -1.18 -- 76.17 1135 6.99 --
2095.82 2.13 5.3 -- 0.948 3.16 -- -- -0.838 6.51 84.87 2378 7.18 --
1547.42 1.84 5.48 -5.98 -- -- -- -- -1.51 -- -- -- -- --
2340.2 2.26 5.32 -- 1.67 -- -- -- -0.88 4.21 -- -- -- --
2131.37 2.15 5.39 -- -- 3.79 -- -- -1.15 -- 89 2404 7.53 --
2490.44 2.33 5.33 -- -- -- -- -- -0.843 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1126.55 humidity 50 4320 > th dose independent rect. 13 4
2 1134.14 humidity 70 4320 < th dose dependent rect. 18 13
3 1134.15 humidity 70 4320 < th dose dependent rect. 18 3
14 1136.49 humidity 80 1440 < th dose dependent rect. 16 3
17 1138.00 humidity 70 1440 < th dose independent rect. 17 14
18 1138.04 humidity 70 1440 < th dose independent rect. 17 17
20 1138.55 humidity 70 1440 < th dose independent sin 11 NA
21 1138.60 temperature 30 4320 > th dose dependent rect. 18 1
36 1138.73 humidity 70 1440 < th dose independent rect. 17 3
49 1139.36 humidity 70 1440 < th dose dependent rect. 16 16
62 1139.99 humidity 70 1440 < th dose dependent rect. 16 18
67 1141.51 humidity 70 1440 > th dose independent sin 11 NA
75 1144.85 humidity 70 1440 < th dose dependent sin 11 NA
81 1145.62 humidity 70 1440 > th dose independent rect. 17 17
110 1146.51 humidity 50 4320 > th dose independent rect. 13 15
113 1146.79 humidity 50 4320 > th dose independent rect. 13 7
114 1146.81 humidity 50 4320 > th dose independent rect. 13 12
115 1146.82 humidity 50 4320 > th dose independent rect. 13 9
120 1147.01 humidity 50 4320 > th dose independent rect. 13 20
124 1147.21 humidity 50 4320 > th dose independent rect. 13 22
132 1147.67 wind 1 270 < th dose independent rect. 4 1
170 1150.18 temperature 25 720 > th dose dependent rect. 18 5
177 1150.65 wind 1 270 < th dose dependent rect. 4 1
180 1150.93 humidity 50 4320 > th dose independent rect. 15 13
183 1151.17 humidity 50 4320 > th dose independent rect. 15 5
184 1151.19 humidity 50 4320 > th dose independent rect. 15 7
185 1151.28 humidity 50 4320 > th dose independent rect. 15 18
186 1151.30 humidity 50 4320 > th dose independent rect. 15 10
199 1151.68 temperature 30 4320 > th dose independent rect. 18 1
219 1152.21 radiation 30 4320 < th dose independent rect. 7 1
227 1152.72 temperature 30 1440 > th dose dependent rect. 17 17
234 1152.93 radiation 30 4320 < th dose independent rect. 19 13
238 1153.03 radiation 30 4320 < th dose independent rect. 21 11
243 1153.15 radiation 30 4320 < th dose independent rect. 23 9
257 1153.22 humidity 50 4320 < th dose independent rect. 11 6
313 1153.84 radiation 20 1440 > th dose independent rect. 16 16
322 1154.17 radiation 30 4320 < th dose independent rect. 17 15
342 1155.58 humidity 50 4320 > th dose independent rect. 10 7
345 1155.62 humidity 50 4320 > th dose independent rect. 6 11
351 1155.82 temperature 30 4320 < th dose independent rect. 18 11
353 1155.84 radiation 30 4320 < th dose independent rect. 2 6
355 1155.86 humidity 50 4320 > th dose independent rect. 23 18
372 1155.92 temperature 30 1440 > th dose dependent sin 11 NA
378 1156.17 temperature 30 1440 > th dose independent rect. 17 17
379 1156.17 humidity 50 4320 > th dose independent rect. 21 20
382 1156.29 humidity 50 4320 > th dose independent rect. 2 15
384 1156.37 humidity 50 4320 > th dose independent rect. 19 22
401 1156.93 humidity 70 4320 > th dose independent rect. 19 9
407 1157.07 radiation 20 1440 > th dose dependent rect. 16 16
432 1157.35 temperature 30 4320 < th dose independent rect. 18 8
456 1157.55 humidity 70 4320 > th dose independent rect. 19 6
462 1157.66 temperature 30 1440 < th dose independent rect. 17 17
480 1157.78 temperature 30 4320 < th dose independent rect. 18 5
488 1157.96 radiation 30 4320 > th dose independent rect. 7 1
530 1158.17 temperature 25 720 > th dose dependent rect. 20 1
555 1158.68 temperature 30 4320 < th dose independent rect. 18 2
600 1159.48 humidity 50 4320 < th dose independent rect. 15 23
690 1161.05 temperature 25 720 > th dose dependent rect. 20 3
744 1162.00 temperature 30 1440 > th dose independent sin 11 NA
793 1162.74 temperature 30 1440 < th dose independent sin 11 NA