Os02g0807600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0807600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.41 | 0.413 | 7.22 | -0.0405 | 0.888 | 0.142 | -0.391 | -1.76 | 0.866 | 4.38 | 24.78 | 706 | -- | -- |
| 82.52 | 0.426 | 7.27 | -0.567 | 0.834 | 0.104 | -0.758 | -- | 0.719 | 4.9 | 25.6 | 780 | -- | -- |
| 77.8 | 0.411 | 7.22 | -0.0413 | 0.88 | 0.142 | -- | -1.77 | 0.868 | 4.35 | 24.75 | 684 | -- | -- |
| 83.67 | 0.429 | 7.29 | -0.619 | 0.974 | -0.107 | -- | -- | 0.646 | 4.43 | 26.5 | 982 | -- | -- |
| 105.29 | 0.478 | 7.18 | 0.0978 | -- | 0.606 | -- | -1.63 | 1.09 | -- | 25.6 | 279 | -- | -- |
| 83.23 | 0.428 | 7.28 | -0.591 | 0.907 | -- | -0.682 | -- | 0.675 | 4.74 | -- | -- | -- | -- |
| 84.37 | 0.43 | 7.28 | -0.588 | 0.901 | -- | -- | -- | 0.678 | 4.59 | -- | -- | -- | -- |
| 107.8 | 0.484 | 7.23 | -0.424 | -- | 0.515 | -- | -- | 0.932 | -- | 25.7 | 250 | -- | -- |
| 91.63 | 0.446 | 7.26 | -- | 0.906 | 0.206 | -- | -- | 0.768 | 4.52 | 27 | 2972 | -- | -- |
| 127.63 | 0.528 | 7.29 | -0.553 | -- | -- | -- | -- | 0.702 | -- | -- | -- | -- | -- |
| 93.49 | 0.452 | 7.27 | -- | 0.89 | -- | -- | -- | 0.744 | 4.61 | -- | -- | -- | -- |
| 112.17 | 0.493 | 7.23 | -- | -- | 0.534 | -- | -- | 0.971 | -- | 25.5 | 214 | -- | -- |
| 135.71 | 0.544 | 7.28 | -- | -- | -- | -- | -- | 0.763 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.06 | temperature | 25.0 | 720 | > th | dose independent | rect. | 14 | 11 |
| 12 | 74.45 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 17 |
| 14 | 74.51 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 15 |
| 17 | 74.57 | temperature | 25.0 | 720 | < th | dose independent | sin | 13 | NA |
| 18 | 74.58 | temperature | 25.0 | 720 | > th | dose independent | sin | 15 | NA |
| 33 | 74.85 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 69 | 75.36 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 12 |
| 73 | 75.41 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 8 |
| 75 | 75.42 | radiation | 10.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 80 | 75.47 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 82 | 75.52 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 10 |
| 93 | 75.62 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 159 | 76.15 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 172 | 76.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 2 |
| 178 | 76.27 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 196 | 76.38 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 233 | 76.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 235 | 76.50 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 253 | 76.58 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 288 | 76.72 | temperature | 20.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 307 | 76.76 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 321 | 76.78 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 332 | 76.83 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 334 | 76.84 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 338 | 76.84 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 365 | 76.91 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 409 | 77.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 431 | 77.11 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 11 |
| 432 | 77.11 | radiation | 10.0 | 720 | > th | dose independent | rect. | 15 | 15 |
| 471 | 77.16 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 472 | 77.16 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 20 |
| 474 | 77.16 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 477 | 77.16 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 485 | 77.18 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 18 |
| 489 | 77.18 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 19 | 9 |
| 495 | 77.20 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 529 | 77.23 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 554 | 77.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 565 | 77.29 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 573 | 77.31 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 609 | 77.38 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 614 | 77.39 | radiation | 1.0 | 720 | < th | dose independent | rect. | 12 | 16 |
| 617 | 77.39 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 622 | 77.40 | humidity | 90.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 623 | 77.40 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 641 | 77.43 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 23 |
| 649 | 77.44 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 665 | 77.45 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 1 |
| 689 | 77.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 711 | 77.48 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 727 | 77.50 | humidity | 90.0 | 720 | < th | dose independent | rect. | 9 | 14 |
| 734 | 77.50 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 756 | 77.53 | temperature | 10.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 773 | 77.55 | radiation | 1.0 | 720 | < th | dose independent | sin | 17 | NA |
| 782 | 77.55 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 795 | 77.57 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 801 | 77.58 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 812 | 77.59 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 11 |
| 813 | 77.59 | humidity | 90.0 | 720 | < th | dose independent | rect. | 11 | 12 |
| 823 | 77.61 | temperature | 25.0 | 720 | < th | dose independent | no | NA | NA |
| 828 | 77.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 834 | 77.63 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 851 | 77.63 | radiation | 10.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 885 | 77.67 | radiation | 1.0 | 720 | > th | dose independent | sin | 17 | NA |
| 894 | 77.67 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 897 | 77.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 904 | 77.69 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 905 | 77.69 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 934 | 77.70 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 935 | 77.70 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 939 | 77.71 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 952 | 77.72 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 7 |
| 973 | 77.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 16 |