Os02g0807300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0807300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.85 | 0.546 | 5.76 | 0.567 | 0.823 | -0.784 | -0.41 | -0.0534 | 0.0228 | 1.74 | 20.44 | 418 | -- | -- |
| 134.85 | 0.541 | 5.76 | 0.576 | 0.823 | -0.778 | -0.406 | -- | 0.0248 | 1.75 | 20.43 | 415 | -- | -- |
| 135.47 | 0.542 | 5.76 | 0.582 | 0.822 | -0.777 | -- | -0.0253 | 0.0192 | 1.84 | 20.5 | 415 | -- | -- |
| 135.47 | 0.542 | 5.76 | 0.587 | 0.824 | -0.776 | -- | -- | 0.0286 | 1.84 | 20.4 | 415 | -- | -- |
| 170.93 | 0.609 | 5.75 | 0.645 | -- | -0.913 | -- | 0.0575 | 0.0407 | -- | 20.2 | 227 | -- | -- |
| 153.77 | 0.581 | 5.79 | 0.319 | 0.873 | -- | -0.328 | -- | -0.138 | 2.16 | -- | -- | -- | -- |
| 154.15 | 0.581 | 5.79 | 0.328 | 0.874 | -- | -- | -- | -0.136 | 2.25 | -- | -- | -- | -- |
| 170.92 | 0.609 | 5.75 | 0.651 | -- | -0.929 | -- | -- | 0.0432 | -- | 20.1 | 232 | -- | -- |
| 143.79 | 0.558 | 5.78 | -- | 0.82 | -0.627 | -- | -- | -0.0555 | 1.91 | 20.49 | 406 | -- | -- |
| 199.63 | 0.66 | 5.79 | 0.365 | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
| 156.99 | 0.586 | 5.8 | -- | 0.88 | -- | -- | -- | -0.173 | 2.25 | -- | -- | -- | -- |
| 170.81 | 0.609 | 5.72 | -- | -- | -0.633 | -- | -- | 0.164 | -- | 24.59 | 121 | -- | -- |
| 203.14 | 0.665 | 5.79 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 4 | 132.96 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 17 |
| 15 | 133.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 19 | 133.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 24 | 133.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 25 | 133.94 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 22 |
| 26 | 133.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 30 | 134.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 47 | 134.26 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 8 |
| 55 | 134.36 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 9 |
| 69 | 134.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 82 | 134.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 22 |
| 159 | 135.31 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 170 | 135.36 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 177 | 135.41 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 191 | 135.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 202 | 135.56 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 16 |
| 203 | 135.56 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 205 | 135.57 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 212 | 135.62 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 215 | 135.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 249 | 135.79 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 21 |
| 259 | 135.82 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 263 | 135.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 275 | 135.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 285 | 135.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 298 | 136.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 334 | 136.19 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 20 |
| 342 | 136.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 383 | 136.39 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 386 | 136.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 411 | 136.45 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 421 | 136.48 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 19 |
| 422 | 136.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 426 | 136.49 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 484 | 136.70 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 490 | 136.71 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 504 | 136.73 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 7 | 19 |
| 522 | 136.78 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 541 | 136.82 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 593 | 136.92 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 650 | 137.07 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 22 |
| 661 | 137.10 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 667 | 137.12 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 691 | 137.16 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 717 | 137.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 19 |
| 729 | 137.22 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 5 | 17 |
| 732 | 137.23 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 748 | 137.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 768 | 137.29 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 802 | 137.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 810 | 137.36 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 821 | 137.38 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 847 | 137.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 872 | 137.45 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 881 | 137.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 906 | 137.49 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 915 | 137.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 924 | 137.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 930 | 137.52 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 931 | 137.52 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 23 |
| 932 | 137.52 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 23 |
| 964 | 137.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |