Os02g0807000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoenolpyruvate carboxylase kinase 1.
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Os02g0807000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoenolpyruvate carboxylase kinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.75 | 0.581 | 8.17 | -0.0255 | 1.88 | -12.3 | -0.563 | -40.8 | -0.791 | 8.04 | 9.797 | 31 | -- | -- |
| 187.25 | 0.637 | 8.34 | 0.363 | 1.98 | -6.48 | -1.85 | -- | -1.18 | 7.9 | 9.8 | 30 | -- | -- |
| 151.49 | 0.573 | 8.17 | -0.0589 | 1.87 | -12.1 | -- | -40.1 | -0.797 | 8.07 | 9.8 | 21 | -- | -- |
| 155.51 | 0.581 | 8.25 | 0.24 | 1.88 | -3.54 | -- | -- | -0.811 | 8.06 | 9.8 | 29 | -- | -- |
| 345.51 | 0.866 | 8.22 | -0.0365 | -- | -12 | -- | -38.5 | -0.771 | -- | 9.735 | 22 | -- | -- |
| 181.62 | 0.632 | 8.23 | 0.381 | 1.91 | -- | -0.73 | -- | -0.753 | 7.9 | -- | -- | -- | -- |
| 183.14 | 0.634 | 8.23 | 0.362 | 1.91 | -- | -- | -- | -0.752 | 7.96 | -- | -- | -- | -- |
| 345.73 | 0.866 | 8.29 | 0.253 | -- | -4.15 | -- | -- | -0.779 | -- | 9.61 | 30 | -- | -- |
| 156.79 | 0.583 | 8.25 | -- | 1.87 | -3.42 | -- | -- | -0.822 | 8.09 | 9.8 | 31 | -- | -- |
| 382.42 | 0.914 | 8.28 | 0.382 | -- | -- | -- | -- | -0.727 | -- | -- | -- | -- | -- |
| 186.6 | 0.639 | 8.24 | -- | 1.91 | -- | -- | -- | -0.792 | 7.94 | -- | -- | -- | -- |
| 347.41 | 0.868 | 8.29 | -- | -- | -4.24 | -- | -- | -0.802 | -- | 9.6 | 29 | -- | -- |
| 386.27 | 0.917 | 8.29 | -- | -- | -- | -- | -- | -0.769 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.69 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 9 | 155.30 | wind | 9 | 30 | > th | dose dependent | rect. | 10 | 8 |
| 65 | 156.27 | humidity | 60 | 14400 | < th | dose independent | sin | 6 | NA |
| 70 | 156.61 | humidity | 60 | 14400 | > th | dose independent | sin | 6 | NA |
| 72 | 156.65 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 85 | 156.69 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 87 | 156.70 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 128 | 156.87 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 132 | 156.88 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 143 | 156.89 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 167 | 157.06 | wind | 9 | 30 | > th | dose dependent | sin | 21 | NA |
| 171 | 157.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 173 | 157.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 14 |
| 174 | 157.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 17 |
| 215 | 157.25 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 254 | 157.37 | humidity | 60 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 269 | 157.40 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 16 |
| 273 | 157.41 | humidity | 70 | 14400 | < th | dose dependent | sin | 7 | NA |
| 275 | 157.42 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 7 |
| 284 | 157.43 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 367 | 157.46 | humidity | 60 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 375 | 157.50 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 424 | 157.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 19 |
| 425 | 157.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 426 | 157.59 | humidity | 60 | 14400 | > th | dose independent | no | NA | NA |
| 552 | 157.67 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 647 | 157.88 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 693 | 157.88 | wind | 9 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 703 | 157.92 | humidity | 70 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 710 | 157.96 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 734 | 158.07 | humidity | 70 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 812 | 158.26 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 825 | 158.33 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 899 | 158.53 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 949 | 158.66 | humidity | 70 | 14400 | < th | dose dependent | no | NA | NA |
| 952 | 158.66 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 16 |