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Os02g0806700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Retroelement pol polyprotein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0183) R2 : 0.742
β1 : 1.09 (0.0672) R2dD : 0.155 R2D : 0.153
β2 : 1.53 (0.0478) R2dC : 0.581 R2C : 0.591
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0831 (0.0392) R2dN8 : 0.00342 R2N8 : -0.00489
σ : 0.345
deviance : 54.23
__
_____
C
peak time of C : 5.43
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.67 0.314 12.4 1.59 1.54 -0.428 -0.0512 1.04 0.313 5.41 22.2 1511 -- --
48.06 0.325 12.5 1.19 1.5 -0.329 0.0452 -- 0.18 5.73 22.2 1511 -- --
44.68 0.311 12.4 1.59 1.54 -0.428 -- 1.04 0.313 5.41 22.21 1507 -- --
47.15 0.32 12.5 1.29 1.54 -0.407 -- -- 0.199 5.39 21.7 1453 -- --
101.36 0.469 12.4 1.83 -- -1.14 -- 1.33 0.576 -- 26.2 349 -- --
54.23 0.345 12.5 1.09 1.53 -- -0.0152 -- 0.083 5.43 -- -- -- --
54.23 0.345 12.5 1.09 1.53 -- -- -- 0.0831 5.43 -- -- -- --
101.7 0.47 12.4 1.41 -- -1.03 -- -- 0.426 -- 26.29 327 -- --
84.38 0.43 12.5 -- 1.53 -0.147 -- -- -0.00449 5.53 21.7 1453 -- --
175.58 0.619 12.5 1.14 -- -- -- -- 0.121 -- -- -- -- --
85.54 0.433 12.5 -- 1.54 -- -- -- -0.0383 5.41 -- -- -- --
151.9 0.574 12.5 -- -- -0.888 -- -- 0.248 -- 25.86 316 -- --
209.92 0.676 12.5 -- -- -- -- -- -0.00601 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.26 temperature 10.0 270 > th dose dependent rect. 19 22
2 41.49 temperature 15.0 90 > th dose dependent rect. 21 21
14 42.54 temperature 20.0 90 > th dose independent rect. 21 21
20 42.90 wind 1.0 43200 > th dose independent rect. 2 1
24 42.98 humidity 90.0 14400 > th dose dependent rect. 23 2
26 43.06 humidity 90.0 14400 > th dose independent rect. 21 7
28 43.11 humidity 90.0 14400 > th dose dependent rect. 22 4
29 43.14 temperature 10.0 270 > th dose dependent rect. 21 11
40 43.27 humidity 90.0 14400 > th dose dependent rect. 4 3
41 43.27 temperature 30.0 270 < th dose dependent rect. 16 20
49 43.31 humidity 90.0 14400 > th dose dependent rect. 22 10
57 43.35 humidity 90.0 14400 > th dose dependent rect. 5 1
68 43.41 temperature 20.0 90 > th dose independent rect. 12 15
72 43.42 humidity 90.0 14400 < th dose independent rect. 21 7
84 43.47 humidity 90.0 14400 < th dose independent rect. 23 2
90 43.49 humidity 90.0 14400 < th dose independent rect. 22 9
92 43.49 humidity 90.0 14400 > th dose dependent rect. 3 5
98 43.53 wind 1.0 43200 < th dose independent rect. 2 1
104 43.55 humidity 90.0 14400 > th dose dependent sin 10 NA
166 43.71 humidity 90.0 14400 > th dose independent rect. 23 2
184 43.75 temperature 20.0 1440 > th dose independent rect. 22 1
223 43.84 temperature 10.0 90 > th dose dependent rect. 12 14
229 43.86 temperature 20.0 1440 < th dose independent rect. 22 1
234 43.87 humidity 90.0 14400 > th dose independent sin 10 NA
252 43.91 temperature 10.0 720 > th dose dependent rect. 21 3
270 43.94 temperature 20.0 1440 < th dose independent rect. 21 3
286 43.97 temperature 20.0 720 > th dose independent rect. 6 1
313 44.04 temperature 20.0 1440 < th dose independent rect. 5 1
418 44.32 wind 1.0 43200 < th dose dependent rect. 2 1
425 44.34 humidity 90.0 14400 < th dose independent sin 10 NA
463 44.43 radiation 1.0 14400 < th dose independent rect. 18 11
479 44.47 temperature 20.0 720 > th dose independent rect. 20 13
512 44.54 radiation 1.0 14400 > th dose independent rect. 18 1
579 44.64 radiation 1.0 14400 < th dose independent rect. 18 4
600 44.66 atmosphere 1010.0 90 < th dose independent rect. 21 21
680 44.79 temperature 10.0 720 > th dose dependent rect. 12 21
703 44.84 radiation 1.0 4320 < th dose dependent rect. 4 1
721 44.87 temperature 20.0 1440 < th dose independent rect. 20 11
735 44.88 temperature 10.0 270 > th dose dependent rect. 4 12
746 44.90 radiation 30.0 14400 > th dose dependent rect. 7 1
780 44.93 precipitation 0.1 270 < th dose independent rect. 1 11
783 44.93 precipitation 0.1 270 < th dose dependent rect. 1 11
791 44.94 temperature 10.0 720 > th dose dependent rect. 5 3
792 44.94 atmosphere 995.0 43200 < th dose dependent rect. 12 3
799 44.95 wind 9.0 43200 > th dose independent rect. 5 1
805 44.95 temperature 30.0 270 < th dose dependent rect. 23 23
810 44.96 temperature 30.0 270 < th dose dependent rect. 7 22
815 44.98 radiation 30.0 14400 > th dose independent rect. 7 1
822 44.98 radiation 40.0 14400 < th dose independent rect. 1 7
837 44.99 radiation 40.0 14400 < th dose independent rect. 22 10
840 44.99 radiation 1.0 14400 < th dose independent rect. 18 13
845 44.99 precipitation 0.1 43200 > th dose dependent rect. 5 2
849 45.00 precipitation 0.1 43200 < th dose independent rect. 5 2
851 45.00 temperature 20.0 30 > th dose independent rect. 12 6
860 45.00 precipitation 0.1 43200 < th dose dependent rect. 5 2
863 45.01 radiation 40.0 14400 < th dose independent rect. 4 4
869 45.01 radiation 40.0 14400 < th dose independent rect. 18 14
872 45.01 temperature 20.0 720 > th dose independent rect. 12 21
873 45.01 temperature 25.0 1440 < th dose dependent rect. 21 2
876 45.02 radiation 40.0 14400 < th dose independent rect. 6 2
877 45.02 precipitation 0.1 43200 > th dose independent rect. 5 2
882 45.02 wind 7.0 43200 > th dose dependent rect. 10 2
885 45.02 wind 9.0 43200 > th dose dependent rect. 18 14
890 45.03 radiation 40.0 14400 < th dose independent rect. 20 12
906 45.04 humidity 90.0 14400 > th dose dependent no NA NA
913 45.05 temperature 25.0 1440 < th dose dependent rect. 20 8
925 45.06 atmosphere 995.0 43200 < th dose dependent rect. 9 7
949 45.09 atmosphere 995.0 43200 > th dose independent rect. 13 1
954 45.09 atmosphere 1015.0 270 < th dose independent rect. 12 13
956 45.09 radiation 40.0 4320 < th dose independent rect. 16 17
958 45.09 radiation 20.0 10 < th dose independent rect. 21 21
974 45.10 atmosphere 1010.0 270 < th dose independent rect. 21 19
982 45.11 precipitation 0.1 270 < th dose independent rect. 12 13
995 45.11 radiation 40.0 43200 < th dose dependent rect. 19 10
997 45.11 precipitation 0.1 270 < th dose dependent rect. 12 13