Os02g0805900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dcp2, box A domain containing protein.
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Os02g0805900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dcp2, box A domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.68 | 0.219 | 12 | -0.17 | 0.928 | -0.996 | -0.138 | 0.0188 | 0.133 | 1.58 | 25.8 | 143 | -- | -- |
| 21.62 | 0.217 | 12 | -0.172 | 0.913 | -0.993 | -0.121 | -- | 0.132 | 1.65 | 25.81 | 181 | -- | -- |
| 21.69 | 0.217 | 12 | -0.163 | 0.917 | -1 | -- | -0.0204 | 0.131 | 1.66 | 25.86 | 181 | -- | -- |
| 21.69 | 0.217 | 12 | -0.166 | 0.915 | -0.997 | -- | -- | 0.132 | 1.66 | 25.86 | 181 | -- | -- |
| 45.01 | 0.312 | 12 | -0.356 | -- | -1.21 | -- | 0.477 | 0.12 | -- | 29.95 | 991 | -- | -- |
| 36.04 | 0.281 | 11.9 | 0.0809 | 0.737 | -- | -0.166 | -- | 0.345 | 1.2 | -- | -- | -- | -- |
| 36.15 | 0.282 | 11.9 | 0.0867 | 0.737 | -- | -- | -- | 0.346 | 1.21 | -- | -- | -- | -- |
| 45.28 | 0.313 | 12 | -0.247 | -- | -1.23 | -- | -- | 0.0995 | -- | 29.61 | 993 | -- | -- |
| 22.35 | 0.22 | 11.9 | -- | 0.903 | -0.932 | -- | -- | 0.158 | 1.61 | 25.8 | 180 | -- | -- |
| 69.79 | 0.39 | 11.9 | 0.115 | -- | -- | -- | -- | 0.361 | -- | -- | -- | -- | -- |
| 36.35 | 0.282 | 11.9 | -- | 0.739 | -- | -- | -- | 0.336 | 1.22 | -- | -- | -- | -- |
| 46.69 | 0.318 | 11.9 | -- | -- | -1.13 | -- | -- | 0.147 | -- | 29.71 | 989 | -- | -- |
| 70.14 | 0.391 | 11.9 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 3 | 20.40 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 7 | 20.49 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 9 | 20.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 13 | 20.63 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 15 | 20.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 18 | 20.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 21 | 20.73 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 31 | 20.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 37 | 20.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 46 | 20.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 62 | 20.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 379 | 21.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 389 | 21.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 407 | 21.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 465 | 22.06 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 500 | 22.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 512 | 22.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 597 | 22.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 617 | 22.25 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 632 | 22.27 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 633 | 22.27 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 650 | 22.29 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 724 | 22.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 802 | 22.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 885 | 22.68 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 18 |
| 967 | 22.83 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 972 | 22.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 983 | 22.86 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 997 | 22.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |