Os02g0805800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ABC-1 domain containing protein.
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Os02g0805800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ABC-1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.28 | 0.326 | 12.9 | -1.19 | 0.898 | -0.638 | 0.296 | -0.148 | -0.509 | 8.66 | 22.2 | 10 | -- | -- |
| 48.33 | 0.324 | 12.9 | -1.19 | 0.903 | -0.629 | 0.424 | -- | -0.51 | 8.71 | 22.16 | 9 | -- | -- |
| 48.43 | 0.324 | 12.9 | -1.19 | 0.887 | -0.648 | -- | -0.317 | -0.509 | 8.6 | 22 | 9 | -- | -- |
| 48.92 | 0.326 | 12.9 | -1.18 | 0.89 | -0.649 | -- | -- | -0.509 | 8.61 | 22.24 | 9 | -- | -- |
| 74.71 | 0.403 | 12.9 | -1.13 | -- | -0.986 | -- | -0.208 | -0.465 | -- | 12.82 | 2 | -- | -- |
| 55.62 | 0.35 | 12.8 | -1.17 | 1.39 | -- | 0.5 | -- | -0.501 | 10 | -- | -- | -- | -- |
| 56.6 | 0.352 | 12.8 | -1.15 | 1.39 | -- | -- | -- | -0.5 | 10 | -- | -- | -- | -- |
| 74.7 | 0.403 | 12.9 | -1.15 | -- | -1.04 | -- | -- | -0.503 | -- | 13.21 | 2 | -- | -- |
| 85.27 | 0.43 | 12.8 | -- | 0.892 | -0.617 | -- | -- | -0.384 | 8.74 | 19.85 | 8 | -- | -- |
| 173.33 | 0.615 | 12.9 | -1.17 | -- | -- | -- | -- | -0.502 | -- | -- | -- | -- | -- |
| 91.72 | 0.448 | 12.8 | -- | 1.4 | -- | -- | -- | -0.372 | 10.1 | -- | -- | -- | -- |
| 109.18 | 0.487 | 12.8 | -- | -- | -1.03 | -- | -- | -0.379 | -- | 10.32 | 3 | -- | -- |
| 209.53 | 0.676 | 12.8 | -- | -- | -- | -- | -- | -0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 2 | 45.23 | temperature | 20 | 10 | > th | dose dependent | sin | 4 | NA |
| 3 | 45.35 | temperature | 25 | 10 | > th | dose dependent | sin | 6 | NA |
| 6 | 45.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 10 |
| 10 | 45.65 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 21 |
| 16 | 45.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 20 | 45.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 29 | 45.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 31 | 45.98 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 35 | 46.01 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 1 | 18 |
| 43 | 46.14 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 20 |
| 54 | 46.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 66 | 46.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 74 | 46.37 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 17 |
| 77 | 46.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 80 | 46.42 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 19 |
| 83 | 46.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 163 | 46.87 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 24 | 23 |
| 171 | 46.91 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 18 |
| 239 | 47.19 | radiation | 20 | 10 | < th | dose dependent | sin | 2 | NA |
| 258 | 47.25 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 24 | 23 |
| 278 | 47.30 | radiation | 10 | 270 | > th | dose independent | sin | 7 | NA |
| 283 | 47.31 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 8 |
| 366 | 47.56 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 380 | 47.61 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 383 | 47.63 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 9 |
| 401 | 47.69 | radiation | 20 | 270 | < th | dose dependent | sin | 7 | NA |
| 506 | 47.95 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 7 |
| 545 | 48.02 | temperature | 25 | 90 | > th | dose independent | sin | 5 | NA |
| 546 | 48.02 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 7 |
| 574 | 48.07 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 575 | 48.08 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 6 |
| 595 | 48.12 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 16 |
| 626 | 48.18 | radiation | 10 | 10 | > th | dose independent | sin | 2 | NA |
| 642 | 48.21 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 5 |
| 658 | 48.22 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 23 |
| 664 | 48.23 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 9 |
| 668 | 48.23 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 701 | 48.28 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 19 |
| 707 | 48.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 764 | 48.34 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 779 | 48.37 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 11 |
| 800 | 48.40 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 7 |
| 816 | 48.42 | humidity | 60 | 90 | > th | dose dependent | rect. | 24 | 17 |
| 819 | 48.42 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 838 | 48.45 | humidity | 70 | 90 | > th | dose dependent | rect. | 24 | 15 |
| 847 | 48.47 | humidity | 80 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 860 | 48.49 | humidity | 60 | 10 | > th | dose dependent | sin | 3 | NA |
| 864 | 48.49 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 893 | 48.52 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 11 |
| 899 | 48.52 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 903 | 48.53 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 919 | 48.54 | radiation | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 939 | 48.57 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 14 |
| 947 | 48.59 | radiation | 20 | 30 | < th | dose independent | rect. | 1 | 10 |
| 986 | 48.63 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 13 |
| 992 | 48.63 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 13 |