FiT-DB / Search/ Help/ Sample detail
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Os02g0805500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PAP-specific phosphatase HAL2-like (3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')- phosphohydrolase) (DPNPase) (Halotolerance protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.72 | 0.3 | 10.2 | 0.321 | 1.61 | -0.767 | -0.271 | 0.105 | -0.287 | 18.2 | 3.76 | 80 | -- | -- |
| 40.78 | 0.297 | 10.2 | 0.322 | 1.61 | -0.759 | -0.265 | -- | -0.286 | 18.2 | 3.67 | 80 | -- | -- |
| 40.9 | 0.298 | 10.2 | 0.325 | 1.6 | -0.755 | -- | 0.0993 | -0.287 | 18.2 | 3.85 | 82 | -- | -- |
| 40.95 | 0.298 | 10.2 | 0.325 | 1.61 | -0.748 | -- | -- | -0.286 | 18.1 | 3.709 | 80 | -- | -- |
| 46.48 | 0.318 | 10.1 | 0.366 | -- | -1.92 | -- | -0.0455 | -0.312 | -- | 3.716 | 555 | -- | -- |
| 49.16 | 0.329 | 10.1 | 0.343 | 1.89 | -- | -0.0399 | -- | -0.229 | 16.3 | -- | -- | -- | -- |
| 49.17 | 0.328 | 10.1 | 0.343 | 1.89 | -- | -- | -- | -0.23 | 16.3 | -- | -- | -- | -- |
| 45.66 | 0.315 | 10.1 | 0.241 | -- | -1.99 | -- | -- | -0.337 | -- | 3.398 | 558 | -- | -- |
| 43.72 | 0.308 | 10.2 | -- | 1.61 | -0.76 | -- | -- | -0.312 | 18.2 | 3.229 | 78 | -- | -- |
| 240.87 | 0.725 | 10.1 | 0.268 | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
| 52.26 | 0.338 | 10.1 | -- | 1.88 | -- | -- | -- | -0.268 | 16.3 | -- | -- | -- | -- |
| 47.16 | 0.32 | 10.1 | -- | -- | -1.99 | -- | -- | -0.362 | -- | 3.139 | 560 | -- | -- |
| 242.76 | 0.727 | 10.1 | -- | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.50 | temperature | 20.0 | 90 | > th | dose independent | rect. | 18 | 11 |
| 7 | 34.56 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 10 | 34.98 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 4 |
| 16 | 35.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 11 |
| 22 | 36.15 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 22 | 11 |
| 29 | 36.64 | temperature | 20.0 | 270 | < th | dose independent | rect. | 20 | 11 |
| 35 | 36.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 48 | 37.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 12 |
| 62 | 37.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 73 | 37.39 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 12 |
| 87 | 37.58 | temperature | 20.0 | 270 | > th | dose independent | sin | 11 | NA |
| 109 | 37.77 | temperature | 20.0 | 270 | < th | dose independent | sin | 11 | NA |
| 118 | 37.89 | radiation | 10.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 167 | 38.17 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 3 |
| 188 | 38.32 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 10 |
| 189 | 38.32 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 217 | 38.50 | radiation | 10.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 224 | 38.52 | radiation | 40.0 | 720 | < th | dose independent | rect. | 15 | 14 |
| 254 | 38.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 4 |
| 269 | 38.72 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 14 |
| 294 | 38.84 | temperature | 25.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 310 | 38.94 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 323 | 38.98 | temperature | 20.0 | 10 | < th | dose independent | rect. | 23 | 7 |
| 331 | 38.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 332 | 38.99 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 336 | 38.99 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 21 |
| 338 | 39.00 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 12 | 5 |
| 340 | 39.00 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 12 | 5 |
| 371 | 39.10 | temperature | 10.0 | 720 | > th | dose independent | rect. | 5 | 10 |
| 372 | 39.10 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 5 | 10 |
| 373 | 39.10 | temperature | 10.0 | 720 | > th | dose independent | rect. | 15 | 14 |
| 374 | 39.10 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 380 | 39.13 | temperature | 10.0 | 720 | > th | dose independent | rect. | 12 | 5 |
| 382 | 39.13 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 12 | 5 |
| 383 | 39.13 | temperature | 10.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 386 | 39.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 12 |
| 387 | 39.13 | temperature | 10.0 | 720 | > th | dose independent | rect. | 3 | 14 |
| 390 | 39.13 | temperature | 10.0 | 720 | > th | dose independent | rect. | 17 | 19 |
| 393 | 39.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 12 |
| 409 | 39.18 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 414 | 39.20 | temperature | 10.0 | 720 | > th | dose independent | rect. | 24 | 5 |
| 415 | 39.20 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 5 |
| 416 | 39.20 | humidity | 50.0 | 720 | > th | dose independent | rect. | 24 | 5 |
| 419 | 39.20 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 24 | 5 |
| 420 | 39.20 | radiation | 20.0 | 720 | < th | dose independent | rect. | 24 | 5 |
| 423 | 39.20 | temperature | 10.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 429 | 39.21 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 433 | 39.22 | wind | 9.0 | 720 | < th | dose independent | rect. | 24 | 5 |
| 437 | 39.23 | radiation | 1.0 | 720 | < th | dose independent | rect. | 24 | 5 |
| 529 | 39.50 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 531 | 39.50 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 14 |
| 532 | 39.50 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 533 | 39.52 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 19 |
| 536 | 39.52 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 539 | 39.54 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 551 | 39.57 | wind | 1.0 | 720 | > th | dose independent | rect. | 12 | 5 |
| 572 | 39.60 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 21 |
| 587 | 39.65 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 592 | 39.66 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 593 | 39.67 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 3 |
| 594 | 39.67 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 596 | 39.67 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 19 |
| 597 | 39.67 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 607 | 39.69 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 12 |
| 613 | 39.71 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 617 | 39.71 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 624 | 39.72 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 632 | 39.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 641 | 39.77 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 662 | 39.81 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 666 | 39.82 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 3 |
| 667 | 39.82 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 24 | 5 |
| 671 | 39.82 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 674 | 39.83 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 11 |
| 685 | 39.85 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 3 |
| 686 | 39.85 | humidity | 50.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 688 | 39.85 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 689 | 39.85 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 5 | 3 |
| 690 | 39.85 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 10 |
| 692 | 39.85 | temperature | 10.0 | 720 | > th | dose independent | rect. | 8 | 21 |
| 703 | 39.86 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 7 | 14 |
| 709 | 39.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 720 | 39.88 | temperature | 10.0 | 720 | > th | dose independent | rect. | 20 | 21 |
| 733 | 39.90 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 19 |
| 736 | 39.90 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 740 | 39.93 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 751 | 39.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 12 |
| 757 | 39.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 12 |
| 758 | 39.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 12 |
| 759 | 39.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 12 |
| 766 | 39.97 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 777 | 39.99 | radiation | 40.0 | 720 | < th | dose independent | rect. | 5 | 3 |
| 790 | 40.02 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 823 | 40.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 12 |
| 828 | 40.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 12 |
| 833 | 40.09 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 873 | 40.15 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 895 | 40.17 | wind | 9.0 | 720 | < th | dose independent | rect. | 15 | 14 |
| 905 | 40.18 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 20 |
| 934 | 40.23 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 10 |
| 935 | 40.23 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 938 | 40.24 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 947 | 40.24 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 960 | 40.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 12 |
| 975 | 40.28 | humidity | 70.0 | 270 | > th | dose independent | rect. | 24 | 20 |
| 996 | 40.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 12 |
| 997 | 40.31 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 22 |
