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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0804900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribonucleotide reductase large subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.25 (0.0281) R2 : 0.837
β1 : 1.15 (0.103) R2dD : 0.054 R2D : 0.0352
β2 : 4.05 (0.0874) R2dC : 1.14 R2C : 0.522
β3 : 2.2 (0.103) R2dE : 0.238 R2E : -0.36
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.558 (0.06) R2dN8 : 0.0416 R2N8 : 0.00126
σ : 0.525
deviance : 127.07
__
_____
C
peak time of C : 19.7
E
wheather : temperature
threshold : 36.25
memory length : 322
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.4
open length of G : 9.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.57 0.512 5.24 1.26 3.81 2.02 1.71 1.79 0.59 20 31.09 285 22.1 8.61
124.15 0.519 5.25 1.26 3.82 1.87 1.29 -- 0.572 20.1 32.41 324 22.1 8.3
126.26 0.523 5.25 1.24 3.82 1.9 -- 1.38 0.568 20 32.17 286 21.9 8.87
127.07 0.525 5.25 1.15 4.05 2.2 -- -- 0.558 19.7 36.25 322 21.4 9.25
145.53 0.562 5.18 1.27 -- -3.27 -- -1.33 0.441 -- 121.7 479 0.6 9.94
147.07 0.569 5.24 1.2 3.16 -- 1.32 -- 0.498 21.3 -- -- -- --
153.34 0.58 5.24 1.16 3.16 -- -- -- 0.497 21.3 -- -- -- --
149.17 0.569 5.16 1.12 -- -3.17 -- -- 0.486 -- 223.1 499 23.9 10.8
166.52 0.601 5.28 -- 4.2 2.21 -- -- 0.405 19.5 45.47 328 21.3 9.27
735.16 1.27 5.16 1.17 -- -- -- -- 0.483 -- -- -- -- --
188.66 0.643 5.27 -- 3.16 -- -- -- 0.368 21.3 -- -- -- --
178.57 0.622 5.21 -- -- -3.26 -- -- 0.309 -- 104.9 750 18.6 17.3
771.37 1.3 5.19 -- -- -- -- -- 0.353 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.45 temperature 30.0 270 < th dose dependent rect. 22 9
4 121.24 temperature 25.0 270 < th dose independent rect. 22 9
5 121.31 temperature 20.0 30 > th dose independent rect. 24 12
15 122.85 temperature 10.0 30 > th dose dependent rect. 12 12
17 123.32 wind 7.0 90 < th dose independent rect. 12 19
19 123.42 precipitation 0.1 90 < th dose independent rect. 12 19
20 123.42 precipitation 0.1 90 < th dose dependent rect. 12 19
21 123.54 temperature 15.0 30 > th dose dependent rect. 12 8
29 123.87 temperature 20.0 30 > th dose independent rect. 20 16
31 123.94 temperature 15.0 90 > th dose independent rect. 12 19
33 124.05 temperature 25.0 30 > th dose independent rect. 12 8
34 124.11 temperature 10.0 90 > th dose independent rect. 7 5
35 124.11 atmosphere 995.0 90 > th dose independent rect. 7 5
36 124.11 atmosphere 1015.0 90 < th dose independent rect. 7 5
39 124.14 temperature 15.0 30 > th dose dependent rect. 24 12
40 124.16 temperature 10.0 720 > th dose dependent rect. 12 1
41 124.17 precipitation 0.1 90 < th dose independent rect. 7 5
42 124.17 precipitation 0.1 90 < th dose dependent rect. 7 5
49 124.39 wind 7.0 270 < th dose independent rect. 10 21
62 124.73 temperature 20.0 90 > th dose independent rect. 7 5
63 124.75 wind 1.0 90 > th dose independent rect. 7 5
66 124.84 wind 9.0 90 < th dose independent rect. 7 5
67 124.90 wind 5.0 720 < th dose independent rect. 24 1
70 124.97 temperature 10.0 30 > th dose dependent rect. 20 16
74 125.10 radiation 1.0 90 > th dose independent rect. 7 5
77 125.18 temperature 10.0 1440 > th dose independent rect. 8 5
80 125.18 atmosphere 995.0 1440 > th dose independent rect. 8 5
82 125.18 temperature 10.0 1440 > th dose independent rect. 13 19
87 125.23 wind 9.0 270 < th dose independent rect. 9 23
103 125.58 radiation 1.0 90 > th dose independent rect. 12 18
120 125.73 temperature 30.0 270 < th dose dependent rect. 1 5
139 125.95 radiation 40.0 270 < th dose independent rect. 7 3
143 125.99 humidity 90.0 90 < th dose independent rect. 7 5
167 126.12 precipitation 0.1 270 < th dose independent rect. 10 21
169 126.12 precipitation 0.1 270 < th dose dependent rect. 10 21
170 126.13 temperature 10.0 30 > th dose dependent rect. 7 5
198 126.39 temperature 25.0 270 > th dose independent rect. 12 2
202 126.41 temperature 15.0 270 > th dose independent rect. 10 21
218 126.58 radiation 40.0 270 < th dose independent rect. 6 6
225 126.64 temperature 15.0 270 > th dose independent rect. 9 23
230 126.67 atmosphere 995.0 90 > th dose independent rect. 12 19
250 126.82 temperature 30.0 90 < th dose dependent rect. 3 6
255 126.87 wind 9.0 720 < th dose dependent rect. 24 1
270 126.94 wind 7.0 30 < th dose independent rect. 12 8
271 126.94 atmosphere 1015.0 30 < th dose dependent rect. 12 8
275 126.98 wind 7.0 270 < th dose independent rect. 8 1
278 127.01 wind 7.0 270 < th dose independent rect. 7 3
281 127.04 humidity 80.0 720 > th dose independent rect. 24 1
286 127.07 radiation 1.0 720 > th dose independent rect. 12 1
317 127.21 humidity 50.0 270 > th dose independent rect. 7 3
319 127.23 temperature 25.0 270 > th dose independent rect. 10 7
321 127.24 precipitation 0.1 270 < th dose independent rect. 8 1
325 127.24 precipitation 0.1 270 < th dose dependent rect. 8 1
337 127.29 temperature 10.0 270 > th dose independent rect. 8 1
339 127.29 humidity 50.0 270 > th dose independent rect. 8 1
340 127.29 atmosphere 995.0 270 > th dose independent rect. 8 1
341 127.29 atmosphere 1015.0 270 < th dose independent rect. 8 1
350 127.35 humidity 90.0 720 < th dose independent rect. 12 1
354 127.38 humidity 50.0 90 > th dose independent rect. 7 5
355 127.39 wind 7.0 720 < th dose independent rect. 24 9
362 127.45 radiation 40.0 270 < th dose independent rect. 6 20
376 127.56 humidity 50.0 720 > th dose dependent rect. 24 1
386 127.58 precipitation 0.1 30 < th dose independent rect. 12 23
389 127.58 precipitation 0.1 30 < th dose dependent rect. 12 23
390 127.60 radiation 1.0 10 > th dose independent rect. 12 23
410 127.70 atmosphere 1015.0 30 < th dose independent rect. 20 16
416 127.73 precipitation 0.1 30 < th dose independent rect. 12 8
418 127.73 precipitation 0.1 30 < th dose dependent rect. 12 8
423 127.77 temperature 20.0 90 > th dose independent rect. 17 19
445 127.88 atmosphere 1010.0 10 < th dose independent rect. 12 8
473 128.03 wind 9.0 270 < th dose dependent rect. 7 2
482 128.10 radiation 1.0 270 > th dose independent rect. 8 1
498 128.15 temperature 10.0 1440 > th dose independent rect. 13 8
501 128.15 temperature 10.0 1440 > th dose independent rect. 21 16
504 128.15 atmosphere 995.0 1440 > th dose independent rect. 21 16
507 128.16 precipitation 0.1 720 < th dose independent rect. 24 1
508 128.16 precipitation 0.1 720 < th dose dependent rect. 24 1
510 128.18 precipitation 0.1 30 < th dose independent rect. 12 12
511 128.18 precipitation 0.1 30 < th dose dependent rect. 12 12
513 128.19 humidity 50.0 10 > th dose independent rect. 12 20
526 128.24 temperature 15.0 90 > th dose dependent rect. 12 5
537 128.30 temperature 10.0 720 > th dose independent rect. 24 1
538 128.30 temperature 30.0 720 < th dose independent rect. 24 1
539 128.30 humidity 50.0 720 > th dose independent rect. 24 1
542 128.30 atmosphere 995.0 720 > th dose independent rect. 24 1
544 128.30 radiation 1.0 720 < th dose independent rect. 24 1
552 128.30 temperature 10.0 720 > th dose independent rect. 1 23
553 128.30 radiation 1.0 720 < th dose dependent rect. 24 1
559 128.31 temperature 15.0 270 > th dose independent rect. 2 13
562 128.31 atmosphere 1015.0 90 < th dose independent rect. 12 19
573 128.34 temperature 10.0 30 > th dose independent rect. 12 8
576 128.34 temperature 10.0 30 > th dose independent rect. 20 16
577 128.34 atmosphere 995.0 30 > th dose independent rect. 20 16
580 128.35 radiation 40.0 270 < th dose independent rect. 7 18
586 128.38 wind 1.0 30 > th dose independent rect. 11 1
587 128.38 wind 7.0 270 < th dose independent rect. 2 14
589 128.38 wind 9.0 10 < th dose independent rect. 12 23
596 128.41 temperature 15.0 30 > th dose independent rect. 12 12
614 128.49 temperature 10.0 1440 > th dose independent rect. 1 12
617 128.49 temperature 10.0 1440 > th dose independent rect. 13 12
620 128.49 atmosphere 995.0 1440 > th dose independent rect. 1 12
622 128.50 temperature 30.0 270 < th dose independent rect. 8 1
629 128.52 wind 9.0 720 < th dose independent rect. 12 1
633 128.53 wind 9.0 30 < th dose independent rect. 12 12
636 128.54 radiation 40.0 270 < th dose dependent rect. 15 11
646 128.61 temperature 15.0 720 > th dose independent rect. 12 1
649 128.62 radiation 30.0 270 < th dose independent rect. 15 11
668 128.65 temperature 30.0 270 < th dose dependent rect. 3 1
675 128.67 atmosphere 995.0 1440 > th dose independent rect. 12 1
678 128.67 temperature 10.0 1440 > th dose independent rect. 13 23
695 128.71 precipitation 0.1 1440 < th dose independent rect. 9 4
701 128.71 precipitation 0.1 1440 < th dose dependent rect. 9 4
704 128.72 radiation 1.0 30 > th dose independent rect. 11 1
708 128.73 temperature 15.0 30 > th dose independent rect. 12 23
711 128.75 temperature 15.0 270 > th dose dependent rect. 10 7
716 128.78 temperature 10.0 30 > th dose independent rect. 11 1
718 128.78 atmosphere 995.0 30 > th dose independent rect. 11 1
719 128.78 atmosphere 1015.0 30 < th dose independent rect. 11 1
720 128.78 precipitation 0.1 30 < th dose independent rect. 11 1
730 128.78 precipitation 0.1 30 < th dose dependent rect. 11 1
732 128.79 precipitation 0.1 720 < th dose independent rect. 12 1
735 128.79 precipitation 0.1 720 < th dose dependent rect. 12 1
754 128.83 atmosphere 1015.0 30 < th dose independent rect. 24 12
762 128.85 temperature 10.0 30 > th dose independent rect. 24 12
763 128.85 atmosphere 995.0 30 > th dose independent rect. 24 12
767 128.86 atmosphere 1015.0 720 < th dose independent rect. 12 1
783 128.89 wind 9.0 90 < th dose dependent rect. 12 7
795 128.93 wind 9.0 30 < th dose independent rect. 20 16
811 128.96 temperature 25.0 270 < th dose independent rect. 1 6
869 129.10 temperature 10.0 270 > th dose dependent rect. 7 2
899 129.19 wind 9.0 30 < th dose independent rect. 11 1
913 129.24 temperature 10.0 720 > th dose independent rect. 24 9
914 129.24 humidity 50.0 720 > th dose independent rect. 24 9
915 129.24 atmosphere 995.0 720 > th dose independent rect. 24 9
917 129.24 temperature 10.0 720 > th dose independent rect. 9 15
922 129.27 wind 9.0 90 < th dose dependent rect. 12 19
926 129.28 radiation 1.0 90 > th dose independent rect. 12 7
937 129.28 temperature 30.0 270 < th dose dependent rect. 7 12
942 129.29 precipitation 0.1 270 < th dose independent rect. 2 13
947 129.29 precipitation 0.1 270 < th dose dependent rect. 2 13
959 129.34 precipitation 0.1 720 < th dose independent rect. 18 6
962 129.34 precipitation 0.1 720 < th dose dependent rect. 18 6
966 129.35 radiation 40.0 270 < th dose independent rect. 7 16
968 129.36 radiation 1.0 90 > th dose dependent rect. 12 19
993 129.43 temperature 30.0 270 < th dose independent rect. 6 6