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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0804000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0504) R2 : 0.0836
β1 : 0.0771 (0.186) R2dD : 0.000364 R2D : -0.00163
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.67 (0.634) R2dE : 0.129 R2E : -0.0525
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.94 (1.53) R2dD*E : 0.132 R2D*E : -0.0486
γ1 : -0.0939 (0.107) R2dN8 : 0.00207 R2N8 : 0.0015
σ : 0.937
deviance : 404.74
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.05
memory length : 80
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.9
open length of G : 8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
403.55 0.944 3.06 0.0578 0.0764 3.71 0.457 9.09 -0.0948 10.7 20.01 83 13 7.98
430.85 0.967 3.02 0.232 0.0136 1.44 -0.371 -- -0.0473 3.39 20.17 119 15.7 5.05
404.31 0.936 3.06 0.0781 0.087 3.72 -- 8.97 -0.0932 8.67 20.03 81 12.9 8
429.91 0.966 3.03 0.158 0.0067 1.3 -- -- -0.0581 15.1 20.3 127 17.2 5.1
404.74 0.937 3.06 0.0771 -- 3.67 -- 8.94 -0.0939 -- 20.05 80 12.9 8
439.6 0.983 3.04 0.0668 0.0039 -- -0.562 -- -0.106 3.82 -- -- -- --
440.52 0.983 3.04 0.0749 0.0171 -- -- -- -0.103 9.31 -- -- -- --
429.33 0.965 3.03 0.102 -- 1.38 -- -- -0.0737 -- 20.4 125 17.9 4.42
429.76 0.966 3.03 -- 0.085 1.39 -- -- -0.0823 12.9 20.3 127 17.4 4.96
440.54 0.981 3.04 0.0748 -- -- -- -- -0.103 -- -- -- -- --
440.67 0.982 3.04 -- 0.0171 -- -- -- -0.111 8.98 -- -- -- --
429.12 0.965 3.03 -- -- 1.42 -- -- -0.0745 -- 20 104 18.1 4.63
440.69 0.98 3.04 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 404.32 temperature 20.0 90 < th dose independent rect. 13 8
3 404.42 temperature 20.0 90 < th dose independent rect. 15 6
6 404.58 temperature 20.0 90 < th dose independent rect. 9 12
7 404.59 temperature 20.0 90 < th dose independent rect. 17 4
12 406.42 temperature 20.0 30 < th dose dependent rect. 12 8
20 406.53 temperature 20.0 30 < th dose dependent rect. 15 5
62 407.17 wind 7.0 10 > th dose independent rect. 19 1
64 407.17 wind 7.0 10 > th dose dependent rect. 19 1
67 407.20 wind 7.0 10 > th dose independent rect. 19 8
73 407.23 wind 7.0 10 > th dose dependent rect. 19 8
162 414.53 atmosphere 1005.0 10 > th dose dependent rect. 13 8
165 415.12 wind 7.0 720 > th dose independent rect. 8 1
167 415.29 temperature 20.0 90 < th dose independent sin 21 NA
169 415.68 wind 7.0 90 > th dose independent rect. 8 1
170 415.71 wind 7.0 90 > th dose dependent rect. 8 1
182 416.00 temperature 20.0 90 > th dose independent sin 21 NA
184 416.05 wind 7.0 90 > th dose independent rect. 2 7
186 416.06 wind 7.0 90 > th dose dependent rect. 1 8
229 417.34 wind 7.0 720 > th dose independent rect. 1 8
241 417.48 temperature 25.0 10 < th dose dependent sin 20 NA
315 419.23 wind 5.0 90 > th dose dependent rect. 18 1
341 419.93 radiation 1.0 720 > th dose independent rect. 10 20
375 420.39 wind 5.0 720 > th dose dependent rect. 8 1
376 420.43 humidity 90.0 1440 < th dose independent rect. 5 1
378 420.51 temperature 30.0 30 < th dose dependent rect. 13 22
379 420.51 radiation 1.0 720 < th dose dependent rect. 4 22
405 420.93 radiation 1.0 720 < th dose dependent rect. 22 20
426 421.41 humidity 90.0 1440 > th dose independent rect. 5 1
427 421.43 humidity 90.0 43200 < th dose independent rect. 14 1
431 421.49 humidity 90.0 270 > th dose dependent rect. 22 2
436 421.55 radiation 1.0 720 < th dose independent rect. 22 20
441 421.63 radiation 1.0 720 < th dose dependent rect. 22 22
445 421.70 radiation 1.0 720 > th dose independent rect. 10 7
446 421.70 wind 7.0 720 > th dose dependent rect. 1 8
449 421.74 radiation 1.0 720 < th dose independent rect. 4 22
452 421.76 radiation 1.0 720 < th dose dependent rect. 4 14
457 421.89 radiation 20.0 10 < th dose independent rect. 10 1
462 421.90 wind 1.0 90 < th dose dependent rect. 14 11
467 421.98 humidity 80.0 43200 > th dose dependent rect. 14 1
473 422.03 humidity 90.0 1440 < th dose independent rect. 23 18
478 422.08 radiation 1.0 720 < th dose dependent rect. 12 20
490 422.24 wind 7.0 10 < th dose independent sin 11 NA
493 422.27 radiation 1.0 720 > th dose independent rect. 10 9
513 422.49 wind 5.0 90 > th dose dependent rect. 18 16
521 422.59 humidity 90.0 1440 < th dose independent rect. 2 15
525 422.65 humidity 90.0 1440 > th dose independent rect. 23 20
529 422.73 radiation 1.0 720 < th dose independent rect. 4 14
545 422.86 radiation 1.0 720 < th dose independent rect. 22 22
553 422.93 humidity 80.0 1440 > th dose independent rect. 6 11
555 422.93 radiation 1.0 720 < th dose independent rect. 6 20
558 422.98 humidity 80.0 1440 < th dose independent rect. 6 11
559 423.00 wind 1.0 90 < th dose independent rect. 14 11
562 423.01 humidity 90.0 1440 > th dose independent rect. 22 8
570 423.11 humidity 90.0 1440 > th dose independent rect. 1 5
593 423.27 temperature 30.0 10 < th dose dependent rect. 13 13
604 423.31 radiation 1.0 720 < th dose independent rect. 12 19
618 423.36 humidity 80.0 1440 > th dose dependent rect. 23 18
621 423.39 humidity 90.0 1440 > th dose independent rect. 3 3
626 423.44 temperature 25.0 10 < th dose dependent rect. 6 16
632 423.46 humidity 80.0 1440 > th dose dependent rect. 2 15
642 423.50 humidity 70.0 90 < th dose independent rect. 8 1
647 423.52 wind 7.0 43200 < th dose independent rect. 14 2
657 423.57 wind 7.0 43200 > th dose independent rect. 14 2
669 423.65 humidity 80.0 1440 > th dose independent rect. 6 15
672 423.66 radiation 1.0 720 < th dose independent rect. 6 12
681 423.70 radiation 1.0 720 < th dose independent rect. 14 1
682 423.70 radiation 1.0 720 < th dose dependent rect. 14 1
689 423.73 radiation 1.0 720 < th dose independent rect. 12 14
691 423.73 atmosphere 1005.0 30 > th dose dependent rect. 12 22
692 423.74 radiation 1.0 720 < th dose independent rect. 12 5
714 423.84 radiation 1.0 720 < th dose dependent rect. 12 14
718 423.86 radiation 1.0 720 < th dose dependent rect. 19 23
736 423.93 humidity 80.0 1440 < th dose independent rect. 6 15
758 423.99 wind 1.0 90 < th dose dependent rect. 14 7
779 424.05 radiation 1.0 720 < th dose dependent rect. 12 5
821 424.23 humidity 80.0 1440 < th dose independent sin 1 NA
828 424.25 humidity 90.0 43200 > th dose independent rect. 14 1
841 424.26 humidity 80.0 1440 > th dose independent sin 1 NA
845 424.26 radiation 1.0 720 < th dose dependent sin 0 NA
880 424.35 wind 5.0 43200 > th dose dependent rect. 14 1
884 424.36 radiation 1.0 720 > th dose independent sin 23 NA
914 424.43 humidity 80.0 1440 > th dose independent rect. 19 22
915 424.43 humidity 80.0 1440 < th dose independent rect. 19 22
933 424.48 precipitation 0.1 4320 < th dose independent rect. 17 1
937 424.48 precipitation 0.1 4320 < th dose dependent rect. 17 1
947 424.51 humidity 90.0 1440 < th dose independent rect. 22 8
958 424.53 humidity 80.0 1440 < th dose independent rect. 19 19
959 424.53 humidity 90.0 1440 > th dose independent rect. 9 21
972 424.56 radiation 1.0 720 > th dose independent rect. 16 23
973 424.56 radiation 1.0 720 < th dose dependent no NA NA
980 424.57 radiation 1.0 720 < th dose independent rect. 19 23