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Os02g0803400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Vacuolar protein sorting 55 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0132) R2 : 0.05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.136 (0.0277) R2dN8 : 0.0645 R2N8 : 0.05
σ : 0.248
deviance : 28.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.74 0.192 10.9 0.381 0.131 -0.316 -0.347 -0.26 -0.079 5.28 21.7 114 -- --
16.95 0.192 10.9 0.392 0.124 -0.319 -0.292 -- -0.0728 5.4 21.69 115 -- --
16.92 0.192 10.9 0.371 0.139 -0.287 -- -0.162 -0.0755 3.94 21.69 115 -- --
17.02 0.192 10.9 0.371 0.146 -0.281 -- -- -0.0749 3.77 21.7 119 -- --
17.53 0.195 10.9 0.395 -- -0.374 -- -0.167 -0.0718 -- 21.2 157 -- --
19.03 0.205 10.9 0.35 0.309 -- 0.157 -- -0.102 2.21 -- -- -- --
19.12 0.205 10.9 0.346 0.311 -- -- -- -0.104 2.37 -- -- -- --
17.63 0.196 10.9 0.387 -- -0.372 -- -- -0.0707 -- 21.2 158 -- --
20.59 0.211 10.9 -- 0.178 -0.284 -- -- -0.115 3.12 28.14 152 -- --
24.82 0.233 10.9 0.359 -- -- -- -- -0.0959 -- -- -- -- --
22.27 0.221 10.9 -- 0.317 -- -- -- -0.142 2.39 -- -- -- --
21.53 0.216 10.9 -- -- -0.379 -- -- -0.107 -- 21.94 156 -- --
28.22 0.248 10.9 -- -- -- -- -- -0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.54 radiation 20.0 10 < th dose independent rect. 6 4
3 15.59 atmosphere 1005.0 270 > th dose dependent rect. 3 4
5 15.64 temperature 25.0 30 > th dose independent rect. 1 8
6 15.65 temperature 25.0 30 > th dose independent rect. 4 5
13 15.71 humidity 90.0 10 < th dose independent rect. 4 5
20 15.76 humidity 90.0 10 < th dose independent rect. 2 7
27 15.83 radiation 40.0 10 < th dose dependent rect. 6 4
30 15.86 radiation 20.0 90 < th dose independent rect. 6 5
36 15.90 temperature 10.0 30 > th dose dependent rect. 9 21
37 15.91 radiation 20.0 10 < th dose independent rect. 6 8
39 15.93 atmosphere 1005.0 10 > th dose dependent rect. 6 3
68 16.08 humidity 50.0 4320 > th dose independent rect. 7 3
72 16.09 radiation 30.0 10 < th dose dependent rect. 6 8
88 16.16 humidity 50.0 270 > th dose independent rect. 7 22
95 16.18 wind 1.0 270 > th dose independent rect. 4 3
96 16.18 atmosphere 1005.0 30 > th dose independent rect. 6 3
101 16.19 radiation 20.0 10 < th dose independent rect. 6 18
102 16.19 humidity 50.0 30 > th dose independent rect. 9 21
110 16.20 temperature 20.0 270 > th dose dependent rect. 22 14
119 16.23 temperature 20.0 30 > th dose dependent rect. 6 3
130 16.25 temperature 20.0 30 > th dose independent rect. 9 21
149 16.29 wind 1.0 30 > th dose independent rect. 6 3
162 16.31 wind 1.0 270 > th dose independent rect. 3 5
166 16.32 humidity 70.0 30 > th dose independent rect. 6 3
168 16.32 temperature 20.0 270 > th dose dependent sin 7 NA
195 16.37 radiation 20.0 10 < th dose independent rect. 6 20
201 16.38 wind 5.0 30 < th dose independent rect. 6 3
211 16.40 temperature 10.0 1440 > th dose independent rect. 7 3
214 16.40 atmosphere 995.0 1440 > th dose independent rect. 7 3
215 16.40 atmosphere 1015.0 1440 < th dose independent rect. 7 3
217 16.40 temperature 10.0 1440 > th dose independent rect. 10 21
226 16.40 temperature 20.0 270 > th dose dependent rect. 1 8
230 16.41 temperature 10.0 30 > th dose independent rect. 6 3
232 16.41 temperature 30.0 30 < th dose independent rect. 6 3
234 16.41 humidity 50.0 30 > th dose independent rect. 6 3
236 16.41 atmosphere 995.0 30 > th dose independent rect. 6 3
237 16.41 atmosphere 1015.0 30 < th dose independent rect. 6 3
238 16.41 precipitation 0.1 30 < th dose independent rect. 6 3
244 16.41 temperature 10.0 30 > th dose independent rect. 9 21
246 16.41 precipitation 0.1 30 < th dose dependent rect. 6 3
255 16.43 humidity 50.0 90 > th dose independent rect. 9 8
256 16.43 atmosphere 1015.0 30 < th dose independent rect. 9 21
257 16.43 wind 9.0 10 < th dose dependent rect. 6 3
278 16.44 temperature 10.0 10 > th dose dependent rect. 20 10
282 16.45 radiation 1.0 30 > th dose independent rect. 6 3
285 16.45 radiation 40.0 270 < th dose dependent rect. 3 11
289 16.46 radiation 1.0 90 > th dose dependent rect. 9 8
291 16.46 radiation 30.0 10 < th dose dependent rect. 6 18
300 16.48 radiation 1.0 90 > th dose independent rect. 18 15
301 16.48 radiation 20.0 90 < th dose independent rect. 5 23
303 16.48 temperature 15.0 30 > th dose dependent rect. 9 8
309 16.49 radiation 20.0 10 < th dose independent rect. 6 14
311 16.49 temperature 20.0 90 > th dose dependent rect. 3 6
313 16.49 radiation 40.0 270 < th dose dependent rect. 3 8
318 16.49 radiation 1.0 90 > th dose dependent rect. 9 21
319 16.49 radiation 40.0 90 < th dose dependent rect. 5 23
326 16.51 humidity 50.0 270 > th dose independent rect. 9 18
327 16.51 wind 9.0 30 < th dose independent rect. 9 21
344 16.51 humidity 60.0 10 > th dose dependent rect. 16 14
353 16.52 wind 1.0 14400 < th dose independent rect. 10 3
357 16.52 radiation 20.0 270 < th dose independent rect. 3 8
360 16.52 radiation 20.0 90 < th dose independent rect. 13 22
366 16.52 humidity 70.0 10 > th dose dependent rect. 20 10
373 16.53 wind 5.0 10 < th dose independent rect. 6 14
374 16.53 radiation 20.0 10 < th dose independent rect. 6 22
382 16.54 humidity 90.0 43200 > th dose independent rect. 21 1
385 16.54 radiation 20.0 90 < th dose independent rect. 6 9
398 16.55 temperature 20.0 270 > th dose dependent rect. 4 3
405 16.56 wind 1.0 14400 > th dose independent rect. 10 3
410 16.56 radiation 1.0 90 > th dose independent rect. 4 5
423 16.56 radiation 20.0 90 < th dose independent rect. 17 18
431 16.57 wind 5.0 90 < th dose independent rect. 15 18
432 16.57 precipitation 0.1 30 < th dose independent rect. 9 21
444 16.57 precipitation 0.1 30 < th dose dependent rect. 9 21
447 16.58 humidity 50.0 30 > th dose dependent rect. 6 3
480 16.60 radiation 40.0 90 < th dose dependent rect. 6 13
497 16.62 temperature 20.0 10 > th dose independent rect. 20 10
498 16.62 humidity 50.0 270 > th dose independent rect. 7 10
499 16.62 wind 1.0 90 > th dose independent rect. 17 16
500 16.62 radiation 20.0 90 < th dose independent rect. 6 18
525 16.64 radiation 20.0 90 < th dose independent rect. 6 13
526 16.64 atmosphere 995.0 30 > th dose independent rect. 9 21
559 16.66 radiation 10.0 4320 > th dose independent rect. 16 2
570 16.66 radiation 20.0 270 < th dose independent rect. 3 10
583 16.66 wind 9.0 10 < th dose dependent rect. 6 14
586 16.66 radiation 30.0 10 < th dose dependent rect. 6 20
593 16.67 wind 1.0 270 > th dose independent rect. 17 14
618 16.68 wind 1.0 14400 < th dose dependent rect. 10 3
628 16.69 humidity 90.0 270 < th dose independent rect. 6 1
642 16.69 radiation 40.0 10 < th dose dependent rect. 6 14
646 16.70 humidity 90.0 90 < th dose independent rect. 9 8
651 16.70 precipitation 0.1 43200 > th dose dependent rect. 1 3
667 16.71 precipitation 0.1 43200 > th dose dependent rect. 2 1
669 16.71 precipitation 0.1 43200 > th dose dependent rect. 23 5
678 16.72 precipitation 0.1 43200 < th dose independent rect. 1 3
681 16.72 radiation 10.0 30 > th dose independent rect. 9 8
683 16.72 radiation 20.0 10 < th dose independent rect. 6 16
686 16.72 radiation 20.0 90 < th dose independent rect. 15 20
689 16.72 precipitation 0.1 43200 < th dose dependent rect. 1 3
699 16.73 humidity 90.0 43200 < th dose independent rect. 21 1
700 16.73 precipitation 0.1 43200 < th dose independent rect. 2 1
702 16.73 precipitation 0.1 43200 > th dose independent rect. 1 3
707 16.73 humidity 90.0 43200 > th dose dependent rect. 21 1
708 16.73 precipitation 0.1 43200 < th dose dependent rect. 2 1
709 16.73 wind 1.0 43200 < th dose dependent rect. 3 2
720 16.74 radiation 30.0 14400 < th dose independent rect. 12 1
721 16.74 precipitation 0.1 43200 > th dose independent rect. 17 1
731 16.74 precipitation 0.1 90 < th dose independent rect. 17 16
733 16.74 radiation 10.0 14400 < th dose dependent rect. 11 1
744 16.74 precipitation 0.1 90 < th dose dependent rect. 17 16
748 16.75 radiation 30.0 14400 > th dose independent rect. 12 1
749 16.75 precipitation 0.1 43200 > th dose independent rect. 2 1
751 16.75 precipitation 0.1 43200 < th dose independent rect. 23 5
759 16.75 precipitation 0.1 43200 < th dose dependent rect. 23 5
768 16.76 precipitation 0.1 43200 < th dose independent rect. 17 1
772 16.76 precipitation 0.1 43200 > th dose independent rect. 23 5
776 16.76 radiation 20.0 10 < th dose independent rect. 17 17
780 16.76 radiation 1.0 270 > th dose dependent sin 4 NA
781 16.76 radiation 40.0 14400 < th dose dependent rect. 12 1
782 16.76 precipitation 0.1 43200 < th dose dependent rect. 17 1
789 16.76 precipitation 0.1 43200 > th dose dependent rect. 21 21
798 16.77 radiation 20.0 10 < th dose independent rect. 17 23
803 16.77 precipitation 0.1 43200 > th dose dependent rect. 20 8
818 16.77 precipitation 0.1 43200 > th dose dependent rect. 23 19
823 16.78 radiation 10.0 4320 < th dose independent rect. 16 1
840 16.78 precipitation 0.1 43200 > th dose dependent rect. 2 16
844 16.78 temperature 20.0 10 > th dose dependent rect. 20 21
848 16.79 radiation 10.0 4320 < th dose independent rect. 16 4
855 16.79 radiation 10.0 4320 < th dose independent rect. 16 9
863 16.79 radiation 1.0 14400 > th dose dependent rect. 12 1
893 16.80 precipitation 0.1 43200 > th dose independent rect. 17 11
894 16.80 precipitation 0.1 43200 < th dose independent rect. 17 11
918 16.80 precipitation 0.1 43200 > th dose dependent rect. 17 1
924 16.80 precipitation 0.1 43200 < th dose dependent rect. 17 11
959 16.81 radiation 40.0 270 < th dose dependent rect. 12 22
972 16.82 wind 1.0 90 > th dose independent rect. 9 8
975 16.82 precipitation 0.1 43200 < th dose independent rect. 20 9
976 16.82 humidity 70.0 30 > th dose independent rect. 6 10
978 16.82 wind 7.0 90 < th dose independent rect. 17 16
983 16.82 radiation 40.0 270 < th dose dependent sin 4 NA
989 16.82 radiation 10.0 14400 < th dose dependent rect. 10 7
992 16.82 precipitation 0.1 43200 < th dose dependent rect. 20 9