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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0802600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.1 (0.06) R2 : 0.648
β1 : -5.67 (0.239) R2dD : 0.548 R2D : 0.149
β2 : 1.58 (0.157) R2dC : 0.0842 R2C : 0.012
β3 : -1.55 (0.274) R2dE : 0.0295 R2E : -0.0882
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.3 (0.995) R2dD*E : 0.149 R2D*E : -0.208
γ1 : -2.33 (0.131) R2dN8 : 0.351 R2N8 : 0.0777
σ : 1.11
deviance : 564.89
__
_____
C
peak time of C : 19.6
E
wheather : radiation
threshold : 9.37
memory length : 1468
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.11
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
565.17 1.12 5.1 -5.73 1.56 -1.55 -0.315 12.2 -2.34 19.6 9.139 1464 8.24 --
738.9 1.27 5.18 -4.43 1.73 -1.44 1.47 -- -2.2 19.8 9.995 1540 9.54 --
564.89 1.11 5.1 -5.67 1.58 -1.55 -- 12.3 -2.33 19.6 9.37 1468 8.11 --
735 1.26 5.13 -4.71 1.09 -1.46 -- -- -2.16 17.9 6.98 1279 12.6 --
689.32 1.22 5.07 -5.78 -- -1.14 -- 12.5 -2.32 -- 9.179 1458 7.98 --
759.88 1.29 5.11 -4.55 1.43 -- 0.582 -- -1.98 18.7 -- -- -- --
760.47 1.29 5.11 -4.56 1.43 -- -- -- -1.98 18.5 -- -- -- --
744.12 1.27 5.14 -4.61 -- -2.62 -- -- -2.2 -- 8.01 1111 11.4 --
1252.66 1.65 5.1 -- 0.976 -1.59 -- -- -1.73 17.7 10 4175 12.4 --
867.38 1.38 5.08 -4.6 -- -- -- -- -2.01 -- -- -- -- --
1308.47 1.69 5 -- 1.49 -- -- -- -1.47 18.4 -- -- -- --
1239.77 1.64 5.14 -- -- -3.02 -- -- -1.84 -- 10.08 3994 9.75 --
1424.36 1.76 4.97 -- -- -- -- -- -1.5 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 528.12 radiation 40 43200 > th dose independent rect. 7 1
17 528.12 radiation 40 43200 > th dose dependent rect. 7 1
33 552.50 humidity 70 43200 < th dose dependent rect. 21 11
36 561.86 humidity 70 43200 < th dose independent rect. 22 10
37 562.50 wind 1 14400 < th dose dependent rect. 5 1
38 563.37 humidity 70 43200 > th dose independent rect. 23 8
41 563.69 humidity 70 43200 > th dose independent rect. 22 10
42 563.71 humidity 70 43200 < th dose independent rect. 23 8
44 564.84 humidity 60 43200 < th dose independent rect. 19 13
47 565.83 wind 1 14400 < th dose dependent rect. 1 5
49 566.65 humidity 60 43200 > th dose independent rect. 19 13
52 567.36 temperature 15 14400 > th dose independent rect. 2 1
59 571.05 temperature 15 14400 < th dose independent rect. 2 1
68 573.77 radiation 10 1440 < th dose dependent rect. 15 14
69 573.87 radiation 10 1440 < th dose dependent rect. 16 1
71 574.21 radiation 40 43200 < th dose independent rect. 16 15
76 574.89 humidity 60 43200 > th dose independent rect. 20 1
97 577.85 humidity 60 43200 > th dose independent rect. 19 10
100 578.32 temperature 15 43200 < th dose dependent rect. 1 1
105 578.96 humidity 60 43200 < th dose independent rect. 19 9
118 580.34 radiation 40 43200 < th dose independent rect. 15 17
122 580.81 radiation 40 43200 < th dose independent rect. 16 10
130 581.20 humidity 60 43200 > th dose independent rect. 19 3
150 581.65 radiation 40 43200 < th dose independent rect. 15 13
157 581.87 radiation 40 43200 < th dose independent rect. 15 2
160 582.02 humidity 60 43200 < th dose independent rect. 20 1
163 582.05 radiation 10 1440 < th dose dependent sin 14 NA
170 582.63 humidity 70 43200 < th dose dependent rect. 20 1
181 583.31 radiation 40 43200 < th dose independent rect. 20 12
188 583.65 humidity 60 43200 < th dose independent rect. 19 3
192 583.93 temperature 15 14400 > th dose independent rect. 19 9
200 584.34 radiation 40 43200 < th dose independent rect. 6 2
201 584.39 temperature 15 43200 < th dose dependent rect. 23 3
211 584.69 temperature 15 14400 > th dose independent rect. 14 14
214 584.86 temperature 20 14400 < th dose dependent rect. 15 10
268 586.79 radiation 10 1440 < th dose independent rect. 15 2
269 587.01 temperature 15 14400 > th dose independent sin 14 NA
278 587.31 temperature 20 14400 < th dose independent rect. 17 2
302 588.29 temperature 15 14400 < th dose independent rect. 17 12
307 588.42 temperature 20 14400 < th dose dependent sin 18 NA
312 588.60 temperature 15 14400 < th dose independent rect. 13 16
324 588.80 wind 1 43200 < th dose dependent rect. 13 6
336 589.27 wind 1 43200 > th dose independent rect. 15 4
342 589.49 wind 1 14400 < th dose independent rect. 5 1
369 590.13 radiation 30 43200 > th dose dependent rect. 15 2
386 590.19 temperature 20 14400 < th dose dependent rect. 18 2
407 590.51 temperature 15 14400 < th dose independent sin 13 NA
456 591.35 wind 1 14400 > th dose independent rect. 5 1
459 591.38 humidity 70 43200 < th dose dependent rect. 20 7
489 591.82 radiation 1 43200 > th dose independent rect. 10 1
516 592.29 radiation 1 43200 < th dose independent rect. 10 1
517 592.29 radiation 1 43200 < th dose dependent rect. 10 1
526 592.48 radiation 10 43200 > th dose dependent rect. 17 1
541 592.55 temperature 15 14400 > th dose independent rect. 24 20
561 592.82 wind 1 43200 < th dose independent rect. 15 4
588 593.14 temperature 15 14400 > th dose independent rect. 6 23
643 593.88 temperature 15 14400 > th dose independent no NA NA
645 593.91 temperature 15 14400 > th dose independent rect. 16 23
648 593.94 temperature 15 14400 > th dose independent rect. 4 23
658 594.12 temperature 15 14400 > th dose independent rect. 19 23
696 594.66 humidity 70 43200 < th dose dependent rect. 7 1
715 595.05 temperature 15 14400 < th dose independent rect. 24 21
719 595.19 radiation 10 1440 < th dose independent rect. 15 13
771 595.84 temperature 15 14400 > th dose independent rect. 2 23
1000 598.52 radiation 1 43200 < th dose dependent rect. 7 5