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Os02g0802500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to H(+)-translocating (Pyrophosphate-ENERGIZED) inorganic pyrophosphatase beta-1 polypeptide (EC 3.6.1.1) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.43 (0.0629) R2 : 0.719
β1 : 2.9 (0.244) R2dD : 0.112 R2D : 0.097
β2 : 0.478 (0.201) R2dC : 0.00605 R2C : 0.0786
β3 : 9.86 (0.439) R2dE : 0.696 R2E : 0.338
β4 : -7.77 (0.823) R2dD*C : 0.0827 R2D*C : -0.0518
β5 : 16.4 (1.45) R2dD*E : 0.179 R2D*E : -0.098
γ1 : 0.243 (0.132) R2dN8 : 0.003 R2N8 : -0.012
σ : 1.13
deviance : 575.96
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_____
C
peak time of C : 4.2
E
wheather : radiation
threshold : 0.5084
memory length : 745
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 15.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
575.96 1.13 8.43 2.9 0.478 9.86 -7.77 16.4 0.243 4.2 0.5084 745 5.03 15.3
664.39 1.2 8.23 3.92 0.404 8.15 -6.55 -- 0.558 6.37 0.9313 719 5.1 16.2
652.4 1.19 8.41 3.15 1.94 8.67 -- 13.7 0.26 1.66 0.2724 783 4.9 14.8
704.05 1.24 8.28 3.52 1.54 6.31 -- -- 0.453 0.959 1.441 749 4.85 15.8
720.79 1.25 8.38 3.35 -- 9.85 -- 12.8 0.362 -- 0.3062 766 4.97 15.4
902.09 1.41 8.36 2.62 3.94 -- 0.801 -- -0.0167 1.79 -- -- -- --
904.47 1.41 8.37 2.59 3.94 -- -- -- -0.022 1.83 -- -- -- --
723.72 1.25 8.25 3.57 -- 7.61 -- -- 0.36 -- 1.419 733 5.18 16.1
972.33 1.45 8.36 -- 2.48 4.18 -- -- -0.0819 1.76 2.726 728 4.7 16
1846.89 2.01 8.32 2.75 -- -- -- -- 0.0681 -- -- -- -- --
1081.36 1.54 8.43 -- 3.99 -- -- -- -0.311 1.85 -- -- -- --
948.73 1.43 8.42 -- -- 6.23 -- -- -0.236 -- 7.53 807 9.72 11.4
2046.74 2.11 8.39 -- -- -- -- -- -0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 601.45 radiation 1 720 < th dose dependent rect. 5 16
2 606.76 radiation 1 720 < th dose dependent sin 12 NA
3 609.44 humidity 60 720 > th dose dependent rect. 19 1
4 610.99 humidity 50 720 > th dose dependent rect. 18 3
8 616.54 radiation 1 720 < th dose dependent rect. 15 16
22 620.86 humidity 70 720 > th dose independent rect. 18 2
23 620.94 radiation 1 720 < th dose dependent rect. 5 22
50 631.81 radiation 1 720 < th dose dependent rect. 22 23
51 632.37 humidity 70 720 > th dose independent rect. 18 11
64 635.03 radiation 1 720 < th dose dependent rect. 8 23
65 635.32 radiation 1 720 < th dose independent rect. 14 17
66 635.34 radiation 1 720 < th dose independent sin 12 NA
67 635.52 radiation 30 1440 < th dose dependent rect. 18 6
69 635.83 humidity 70 720 > th dose independent rect. 17 13
70 635.88 temperature 30 720 < th dose independent rect. 17 3
89 638.96 radiation 1 720 < th dose dependent no NA NA
93 639.63 radiation 1 720 > th dose independent rect. 10 23
94 640.21 radiation 1 720 < th dose independent rect. 14 21
95 640.21 radiation 1 720 < th dose dependent rect. 24 23
105 642.34 radiation 1 720 > th dose independent rect. 12 23
107 642.62 radiation 1 720 > th dose independent rect. 16 23
120 643.73 radiation 1 720 < th dose independent rect. 22 23
124 644.53 temperature 30 14400 < th dose independent rect. 15 17
125 644.55 temperature 30 14400 < th dose independent rect. 15 9
131 644.63 temperature 30 14400 < th dose independent rect. 15 4
140 644.86 temperature 30 14400 > th dose independent rect. 15 4
155 645.01 radiation 1 720 < th dose independent rect. 5 16
193 646.30 radiation 1 720 < th dose independent rect. 8 23
198 646.45 radiation 1 720 < th dose independent rect. 24 23
208 647.45 temperature 25 1440 > th dose dependent rect. 13 6
211 647.59 temperature 30 14400 < th dose independent rect. 16 1
213 647.73 temperature 30 14400 < th dose independent sin 13 NA
215 647.84 temperature 30 14400 > th dose independent sin 13 NA
216 647.84 radiation 1 720 > th dose independent rect. 17 16
220 648.29 temperature 25 1440 > th dose dependent rect. 14 2
269 649.43 humidity 90 43200 > th dose dependent rect. 21 1
278 649.79 radiation 1 720 < th dose independent rect. 4 23
284 649.93 temperature 30 720 < th dose independent rect. 17 12
287 650.06 radiation 1 1440 > th dose independent rect. 11 19
292 650.27 temperature 25 14400 > th dose dependent rect. 17 4
345 651.17 radiation 1 720 > th dose independent rect. 5 14
356 651.31 humidity 90 43200 > th dose independent rect. 21 1
382 651.93 radiation 1 720 > th dose independent no NA NA
546 654.92 radiation 1 720 < th dose independent no NA NA
583 655.65 radiation 1 1440 < th dose dependent rect. 11 13
603 656.27 temperature 25 1440 > th dose dependent sin 20 NA
639 656.77 humidity 90 43200 < th dose independent rect. 21 1
652 656.99 radiation 1 1440 < th dose dependent sin 22 NA
658 657.08 radiation 1 1440 < th dose dependent rect. 5 19
739 658.05 temperature 25 14400 > th dose dependent sin 13 NA
797 658.90 temperature 10 720 > th dose dependent rect. 3 15
845 659.42 temperature 30 14400 < th dose independent rect. 3 21
851 659.43 temperature 30 14400 < th dose independent rect. 3 19
860 659.44 temperature 30 14400 < th dose independent rect. 5 17
863 659.45 temperature 30 14400 < th dose independent rect. 4 15
888 659.49 temperature 30 14400 < th dose independent rect. 20 23
889 659.50 temperature 30 14400 < th dose independent no NA NA
898 659.50 temperature 30 14400 < th dose independent rect. 23 23