Os02g0802400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os02g0802400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.24 | 0.271 | 11.9 | -0.506 | 0.653 | -1.14 | 1.35 | 2.85 | 0.0322 | 2.14 | 25.15 | 15 | -- | -- |
| 36.22 | 0.282 | 11.9 | -0.844 | 0.69 | -0.895 | 0.977 | -- | -0.0604 | 2.2 | 25.15 | 15 | -- | -- |
| 38.91 | 0.291 | 11.9 | -0.707 | 0.648 | -1.09 | -- | 1.3 | -0.017 | 2.22 | 25.1 | 22 | -- | -- |
| 39.42 | 0.292 | 11.9 | -0.857 | 0.664 | -0.965 | -- | -- | -0.054 | 2.23 | 25 | 14 | -- | -- |
| 54.45 | 0.344 | 11.9 | -0.473 | -- | -1.73 | -- | 1.99 | 0.119 | -- | 24.62 | 13 | -- | -- |
| 48.17 | 0.325 | 12 | -0.971 | 1.03 | -- | 1.23 | -- | -0.125 | 2.44 | -- | -- | -- | -- |
| 53.6 | 0.343 | 12 | -1 | 1.03 | -- | -- | -- | -0.133 | 2.51 | -- | -- | -- | -- |
| 55.77 | 0.348 | 11.9 | -0.734 | -- | -1.57 | -- | -- | 0.0446 | -- | 24.48 | 12 | -- | -- |
| 57.42 | 0.353 | 11.9 | -- | 0.615 | -1.11 | -- | -- | 0.0964 | 2.13 | 22.9 | 32 | -- | -- |
| 116.58 | 0.505 | 11.9 | -0.96 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 80.18 | 0.419 | 11.9 | -- | 1.02 | -- | -- | -- | -0.0207 | 2.49 | -- | -- | -- | -- |
| 68.98 | 0.387 | 11.9 | -- | -- | -1.68 | -- | -- | 0.196 | -- | 23.21 | 13 | -- | -- |
| 140.91 | 0.554 | 11.9 | -- | -- | -- | -- | -- | -0.000202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.69 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 2 | 29.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 4 | 29.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 19 | 29.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 20 | 29.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 75 | 30.18 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 121 | 30.45 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 131 | 30.51 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 142 | 30.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 227 | 30.77 | temperature | 25 | 14400 | > th | dose dependent | sin | 18 | NA |
| 313 | 30.89 | temperature | 20 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 381 | 30.94 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 490 | 31.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 494 | 31.00 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 496 | 31.00 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 505 | 31.01 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 549 | 31.04 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 559 | 31.05 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 561 | 31.05 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 663 | 31.12 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 797 | 31.21 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 841 | 31.24 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 917 | 31.27 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 936 | 31.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 977 | 31.30 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |