FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0801700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, BED-type predicted domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0502) R2 : 0.164
β1 : -0.746 (0.187) R2dD : 0.0318 R2D : 0.0387
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.51 (0.333) R2dE : 0.0402 R2E : 0.00978
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.692 (0.109) R2dN8 : 0.104 R2N8 : 0.0811
σ : 0.936
deviance : 403.56
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1010
memory length : 1735
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
386.94 0.924 3.29 -0.951 0.275 2.64 -0.648 4.14 0.64 6.03 1012 1605 -- --
397.22 0.928 3.27 -0.774 0.2 1.56 -1.3 -- 0.682 4.7 1010 1730 -- --
386.09 0.915 3.29 -0.912 0.282 2.99 -- 4.94 0.631 7.7 1012 1499 -- --
399.31 0.931 3.26 -0.749 0.285 1.53 -- -- 0.69 7.64 1010 1726 -- --
389.4 0.919 3.31 -0.94 -- 5.1 -- 9.84 0.649 -- 1014 1564 -- --
416.82 0.957 3.29 -0.923 0.164 -- -1.19 -- 0.586 4.9 -- -- -- --
417.75 0.957 3.29 -0.915 0.268 -- -- -- 0.593 8.32 -- -- -- --
403.56 0.936 3.27 -0.746 -- 1.51 -- -- 0.692 -- 1010 1735 -- --
413.48 0.947 3.25 -- 0.273 1.6 -- -- 0.757 7.66 1009 1800 -- --
421.73 0.96 3.29 -0.913 -- -- -- -- 0.596 -- -- -- -- --
439.83 0.981 3.26 -- 0.264 -- -- -- 0.695 8.57 -- -- -- --
416.7 0.951 3.29 -- -- 1.37 -- -- 0.604 -- 1008 2058 -- --
443.74 0.983 3.27 -- -- -- -- -- 0.697 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 375.26 radiation 1.0 43200 < th dose dependent rect. 3 1
2 376.57 humidity 80.0 30 > th dose independent rect. 2 1
3 376.69 temperature 20.0 30 > th dose independent rect. 2 1
4 376.72 wind 1.0 30 < th dose independent rect. 2 1
5 376.78 temperature 20.0 30 > th dose dependent rect. 2 1
7 377.30 humidity 80.0 30 > th dose dependent rect. 2 1
8 377.38 wind 3.0 30 < th dose dependent rect. 2 1
17 378.07 temperature 25.0 30 < th dose independent rect. 2 1
18 378.09 wind 9.0 30 < th dose independent rect. 2 1
19 378.09 temperature 10.0 30 > th dose independent rect. 2 1
22 378.09 humidity 50.0 30 > th dose independent rect. 2 1
25 378.09 atmosphere 995.0 30 > th dose independent rect. 2 1
26 378.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 378.09 radiation 1.0 30 < th dose independent rect. 2 1
33 378.09 precipitation 0.1 30 < th dose independent rect. 2 1
34 378.09 temperature 10.0 30 > th dose independent rect. 3 23
35 378.09 radiation 1.0 30 < th dose dependent rect. 2 1
40 378.09 precipitation 0.1 30 < th dose dependent rect. 2 1
42 378.25 atmosphere 995.0 30 > th dose dependent rect. 2 1
44 378.32 atmosphere 1015.0 30 < th dose dependent rect. 2 1
45 378.34 wind 5.0 30 < th dose independent rect. 2 1
56 380.77 temperature 30.0 30 < th dose dependent rect. 2 1
67 383.27 wind 1.0 30 > th dose independent rect. 2 1
102 384.96 atmosphere 1015.0 1440 < th dose independent rect. 14 6
104 385.35 atmosphere 1010.0 1440 > th dose dependent rect. 14 1
106 385.48 radiation 1.0 4320 < th dose dependent rect. 3 1
109 385.90 atmosphere 1015.0 1440 < th dose independent rect. 24 22
117 386.09 wind 9.0 1440 < th dose independent rect. 3 1
118 386.09 temperature 10.0 1440 > th dose independent rect. 3 1
121 386.09 temperature 30.0 1440 < th dose independent rect. 3 1
125 386.09 humidity 50.0 1440 > th dose independent rect. 3 1
134 386.09 atmosphere 995.0 1440 > th dose independent rect. 3 1
135 386.09 radiation 1.0 1440 < th dose independent rect. 3 1
155 386.09 temperature 10.0 1440 > th dose independent rect. 4 23
170 386.34 atmosphere 1010.0 90 > th dose dependent rect. 24 9
173 386.42 atmosphere 1015.0 1440 < th dose independent rect. 7 15
176 386.48 atmosphere 1015.0 1440 < th dose independent rect. 10 12
184 386.72 atmosphere 1015.0 1440 > th dose dependent rect. 24 11
188 386.84 atmosphere 1015.0 1440 > th dose independent rect. 24 11
189 386.84 atmosphere 1015.0 1440 < th dose independent rect. 24 11
193 386.92 atmosphere 1010.0 270 > th dose dependent rect. 24 6
195 386.95 atmosphere 1015.0 1440 > th dose dependent rect. 24 22
196 386.97 atmosphere 1010.0 1440 > th dose dependent rect. 10 10
201 387.08 wind 9.0 30 < th dose independent rect. 3 23
204 387.15 atmosphere 1015.0 1440 < th dose independent sin 6 NA
205 387.15 atmosphere 1015.0 1440 > th dose independent rect. 24 22
221 387.41 atmosphere 1015.0 1440 < th dose independent sin 21 NA
240 387.49 atmosphere 1010.0 1440 > th dose dependent rect. 10 7
242 387.55 atmosphere 1015.0 1440 > th dose independent rect. 14 1
256 387.59 atmosphere 1015.0 1440 < th dose independent rect. 14 3
260 387.64 atmosphere 1015.0 1440 > th dose independent rect. 10 12
283 388.03 atmosphere 1015.0 1440 < th dose independent rect. 19 1
284 388.04 atmosphere 1015.0 1440 < th dose independent rect. 14 22
290 388.12 atmosphere 1010.0 720 > th dose dependent rect. 2 1
291 388.14 atmosphere 1010.0 270 > th dose dependent rect. 6 1
308 388.34 atmosphere 1010.0 270 > th dose independent rect. 24 6
310 388.37 atmosphere 1010.0 90 > th dose dependent rect. 8 1
318 388.42 atmosphere 1015.0 1440 < th dose independent rect. 19 20
325 388.48 atmosphere 1010.0 1440 > th dose dependent rect. 10 17
331 388.56 atmosphere 995.0 30 > th dose independent rect. 3 23
345 388.65 atmosphere 1015.0 1440 > th dose dependent sin 5 NA
350 388.69 radiation 10.0 4320 > th dose independent rect. 17 13
351 388.69 atmosphere 1015.0 1440 < th dose independent rect. 10 22
352 388.69 atmosphere 1015.0 1440 < th dose independent rect. 7 23
354 388.70 atmosphere 1015.0 1440 < th dose independent no NA NA
364 388.74 atmosphere 1015.0 1440 < th dose independent rect. 10 20
416 388.92 atmosphere 1015.0 1440 > th dose independent sin 6 NA
434 389.02 atmosphere 1010.0 270 > th dose independent rect. 5 1
473 389.13 atmosphere 1010.0 1440 > th dose dependent sin 20 NA
517 389.28 atmosphere 1010.0 720 > th dose dependent rect. 22 9
546 389.44 atmosphere 1015.0 1440 > th dose independent rect. 10 1
562 389.44 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
596 389.65 atmosphere 1015.0 1440 > th dose independent sin 21 NA
598 389.65 atmosphere 1015.0 1440 < th dose independent rect. 7 5
600 389.66 atmosphere 1015.0 1440 < th dose independent rect. 11 1
613 389.73 atmosphere 1010.0 1440 > th dose dependent rect. 14 13
644 389.94 radiation 10.0 4320 > th dose independent rect. 17 1
663 389.99 atmosphere 1010.0 720 > th dose dependent rect. 22 7
673 390.08 atmosphere 1010.0 1440 > th dose dependent rect. 18 1
783 390.74 atmosphere 1015.0 1440 > th dose independent rect. 20 19
890 391.12 atmosphere 1015.0 1440 > th dose independent no NA NA
891 391.12 atmosphere 1015.0 1440 > th dose independent rect. 10 18
913 391.12 atmosphere 1015.0 1440 > th dose independent rect. 14 23
997 391.40 atmosphere 1010.0 1440 > th dose dependent no NA NA