Os02g0800100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proteasome maturation factor UMP1 family protein.
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Os02g0800100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proteasome maturation factor UMP1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.79 | 0.293 | 10.8 | -0.7 | 0.456 | 0.94 | 0.394 | -2.26 | -0.269 | 13.4 | 20.38 | 1385 | -- | -- |
| 42.79 | 0.305 | 10.7 | -0.0334 | 0.496 | 0.885 | 0.405 | -- | -0.0448 | 12.9 | 17.82 | 1221 | -- | -- |
| 39.36 | 0.292 | 10.8 | -0.712 | 0.459 | 0.938 | -- | -2.35 | -0.274 | 13.3 | 20.58 | 1351 | -- | -- |
| 42.93 | 0.305 | 10.7 | -0.00519 | 0.54 | 1.05 | -- | -- | -0.0559 | 13 | 16.03 | 1151 | -- | -- |
| 48.03 | 0.325 | 10.7 | -0.102 | -- | 1.07 | -- | -1.14 | -0.107 | -- | 21.66 | 1666 | -- | -- |
| 63.91 | 0.375 | 10.6 | 0.271 | 0.385 | -- | 0.447 | -- | 0.11 | 13.3 | -- | -- | -- | -- |
| 64.73 | 0.377 | 10.6 | 0.287 | 0.384 | -- | -- | -- | 0.112 | 13.2 | -- | -- | -- | -- |
| 49.17 | 0.328 | 10.7 | 0.0841 | -- | 1 | -- | -- | -0.0512 | -- | 21.66 | 1666 | -- | -- |
| 42.71 | 0.304 | 10.7 | -- | 0.531 | 1.14 | -- | -- | -0.0824 | 13.2 | 9.495 | 1173 | -- | -- |
| 73.86 | 0.402 | 10.6 | 0.272 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 66.89 | 0.383 | 10.6 | -- | 0.379 | -- | -- | -- | 0.0802 | 13.2 | -- | -- | -- | -- |
| 49.35 | 0.328 | 10.7 | -- | -- | 1.02 | -- | -- | -0.0627 | -- | 21.66 | 1666 | -- | -- |
| 75.81 | 0.406 | 10.6 | -- | -- | -- | -- | -- | 0.0742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 2 | 37.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 5 | 37.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 37 | 37.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 73 | 38.24 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 83 | 38.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 18 |
| 178 | 38.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 204 | 38.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 317 | 38.92 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 556 | 39.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 787 | 39.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |