Os02g0797200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L39.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0797200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 60S ribosomal protein L39.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.46 | 0.466 | 12.4 | -0.376 | 0.31 | 1.6 | 0.847 | -1.52 | -0.38 | 17.9 | 19.22 | 89 | -- | -- |
| 100.36 | 0.467 | 12.4 | -0.117 | 0.307 | 1.6 | 0.599 | -- | -0.303 | 18.2 | 18.29 | 89 | -- | -- |
| 100.05 | 0.466 | 12.4 | -0.336 | 0.315 | 1.6 | -- | -1.17 | -0.364 | 17.9 | 19.11 | 89 | -- | -- |
| 101.17 | 0.468 | 12.4 | -0.133 | 0.319 | 1.59 | -- | -- | -0.304 | 17.8 | 18.29 | 89 | -- | -- |
| 103.9 | 0.475 | 12.4 | -0.368 | -- | 1.79 | -- | -1.12 | -0.393 | -- | 19.22 | 101 | -- | -- |
| 135.92 | 0.547 | 12.3 | 0.224 | 0.827 | -- | 0.577 | -- | -0.0408 | 16.2 | -- | -- | -- | -- |
| 136.81 | 0.548 | 12.3 | 0.231 | 0.829 | -- | -- | -- | -0.0377 | 16.1 | -- | -- | -- | -- |
| 105.03 | 0.477 | 12.4 | -0.187 | -- | 1.83 | -- | -- | -0.341 | -- | 18.26 | 122 | -- | -- |
| 101.59 | 0.469 | 12.4 | -- | 0.334 | 1.53 | -- | -- | -0.282 | 17.6 | 18.46 | 89 | -- | -- |
| 174.18 | 0.617 | 12.3 | 0.197 | -- | -- | -- | -- | -0.0598 | -- | -- | -- | -- | -- |
| 138.22 | 0.55 | 12.3 | -- | 0.824 | -- | -- | -- | -0.0634 | 16.1 | -- | -- | -- | -- |
| 105.81 | 0.479 | 12.4 | -- | -- | 1.71 | -- | -- | -0.313 | -- | 19.09 | 121 | -- | -- |
| 175.21 | 0.618 | 12.3 | -- | -- | -- | -- | -- | -0.0816 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.34 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 3 | 95.27 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 4 | 95.54 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 7 | 96.15 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 20 | 96.92 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 21 | 96.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 27 | 97.17 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 42 | 97.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 49 | 98.02 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 57 | 98.21 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 65 | 98.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 68 | 98.44 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 76 | 98.61 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 78 | 98.66 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 79 | 98.68 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 80 | 98.68 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 81 | 98.68 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 87 | 98.80 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 88 | 98.82 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 100 | 99.03 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 105 | 99.18 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 117 | 99.32 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 118 | 99.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 122 | 99.39 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 142 | 99.67 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 156 | 99.70 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 159 | 99.73 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 165 | 99.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 169 | 99.81 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 178 | 99.90 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 222 | 100.21 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 233 | 100.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 245 | 100.33 | temperature | 20.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 255 | 100.37 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 258 | 100.37 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 264 | 100.42 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 288 | 100.51 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 291 | 100.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 312 | 100.61 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 316 | 100.62 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 327 | 100.65 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 329 | 100.65 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 330 | 100.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 338 | 100.67 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 385 | 100.80 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 424 | 100.87 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 427 | 100.88 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 548 | 101.09 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 553 | 101.10 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 587 | 101.15 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 628 | 101.20 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 678 | 101.31 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 706 | 101.38 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 734 | 101.44 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 754 | 101.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 763 | 101.49 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 772 | 101.51 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 801 | 101.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 817 | 101.57 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 825 | 101.59 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 833 | 101.60 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 839 | 101.62 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 906 | 101.72 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 917 | 101.74 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 18 |