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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0793200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0366) R2 : 0.375
β1 : 2.03 (0.134) R2dD : 0.325 R2D : 0.31
β2 : 0.645 (0.0955) R2dC : 0.0629 R2C : 0.057
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.0781) R2dN8 : 0.00356 R2N8 : -0.00955
σ : 0.688
deviance : 215.79
__
_____
C
peak time of C : 18.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.31 0.678 4.36 1.95 0.53 -0.56 0.344 1.77 0.198 17.6 63 693 -- --
211.62 0.678 4.35 1.97 0.527 -0.416 0.00839 -- 0.164 17.9 61 696 -- --
208.55 0.673 4.36 1.95 0.528 -0.563 -- 1.64 0.2 17.7 63 697 -- --
211.56 0.677 4.35 1.98 0.523 -0.426 -- -- 0.167 17.9 59.57 674 -- --
218.42 0.688 4.35 1.88 -- -0.861 -- 1.25 0.143 -- 66 646 -- --
215.73 0.689 4.37 2.03 0.644 -- 0.16 -- 0.108 18.1 -- -- -- --
215.79 0.688 4.37 2.03 0.645 -- -- -- 0.109 18.2 -- -- -- --
218.09 0.688 4.36 1.99 -- -0.58 -- -- 0.0879 -- 78.78 488 -- --
313.11 0.824 4.39 -- 0.529 -0.543 -- -- 0.036 17.9 63 922 -- --
237.37 0.72 4.35 2.01 -- -- -- -- 0.0944 -- -- -- -- --
323.91 0.842 4.42 -- 0.617 -- -- -- -0.117 18.4 -- -- -- --
317.45 0.83 4.4 -- -- -0.938 -- -- -0.0991 -- 68.76 664 -- --
343.7 0.865 4.4 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.62 atmosphere 1005 90 > th dose dependent rect. 24 11
2 203.71 atmosphere 1005 10 > th dose dependent rect. 24 11
3 203.93 atmosphere 1005 270 > th dose dependent rect. 24 9
6 204.12 atmosphere 1005 10 > th dose dependent rect. 24 18
8 204.20 atmosphere 1005 270 > th dose dependent rect. 3 6
12 204.46 atmosphere 1010 720 < th dose independent rect. 22 7
16 204.60 atmosphere 1010 10 < th dose independent rect. 2 12
18 204.67 temperature 25 90 > th dose dependent rect. 8 1
20 204.88 wind 1 1440 > th dose independent rect. 15 1
21 204.93 atmosphere 1005 270 > th dose dependent rect. 5 3
22 204.94 temperature 30 90 < th dose independent sin 6 NA
25 205.15 temperature 25 270 > th dose dependent rect. 6 3
27 205.19 atmosphere 1010 720 < th dose independent rect. 22 5
40 205.54 temperature 30 30 > th dose independent sin 6 NA
41 205.57 atmosphere 1005 10 > th dose dependent sin 4 NA
43 205.60 wind 3 720 > th dose independent rect. 2 4
47 205.64 humidity 60 270 > th dose independent rect. 9 11
51 205.71 temperature 30 90 < th dose independent sin 8 NA
55 205.73 atmosphere 1005 10 > th dose dependent rect. 24 20
61 205.80 atmosphere 1005 10 > th dose dependent rect. 4 14
63 205.82 wind 5 10 < th dose independent rect. 23 13
64 205.82 atmosphere 1005 10 > th dose dependent rect. 6 12
79 205.94 wind 3 720 > th dose independent rect. 1 12
81 205.96 humidity 60 720 > th dose independent rect. 8 5
83 205.97 humidity 50 720 > th dose independent rect. 1 18
86 206.01 atmosphere 1010 10 < th dose independent sin 5 NA
87 206.01 wind 1 270 > th dose independent rect. 9 11
90 206.03 radiation 40 270 < th dose independent rect. 9 11
92 206.04 atmosphere 1010 90 < th dose independent sin 5 NA
94 206.05 humidity 60 720 > th dose independent rect. 15 22
114 206.19 wind 1 720 > th dose dependent rect. 2 4
124 206.23 atmosphere 1015 10 < th dose dependent rect. 2 12
126 206.24 atmosphere 1010 10 < th dose independent rect. 9 14
128 206.26 radiation 20 10 < th dose independent rect. 23 12
140 206.32 wind 3 270 > th dose independent rect. 2 18
151 206.35 humidity 50 720 > th dose independent rect. 15 15
154 206.37 wind 3 720 > th dose dependent rect. 2 7
155 206.38 radiation 20 270 > th dose dependent rect. 7 1
157 206.40 wind 3 720 > th dose independent sin 5 NA
165 206.42 temperature 25 270 > th dose dependent rect. 22 12
179 206.49 temperature 30 30 < th dose independent rect. 23 19
216 206.61 humidity 60 90 > th dose independent rect. 1 22
217 206.63 wind 3 270 > th dose independent rect. 5 15
223 206.64 wind 1 1440 < th dose independent rect. 15 1
229 206.66 atmosphere 1015 270 < th dose dependent rect. 1 11
239 206.68 radiation 40 270 < th dose dependent rect. 24 11
244 206.70 radiation 20 30 < th dose independent sin 1 NA
246 206.70 atmosphere 1015 10 < th dose dependent sin 4 NA
254 206.73 atmosphere 1010 10 < th dose independent rect. 18 22
259 206.75 temperature 30 90 > th dose independent rect. 8 5
265 206.75 radiation 20 270 < th dose independent rect. 24 10
275 206.76 wind 5 10 < th dose independent rect. 23 19
285 206.79 atmosphere 1005 10 > th dose dependent rect. 6 4
287 206.79 atmosphere 1005 10 > th dose dependent rect. 4 7
291 206.80 atmosphere 1010 10 < th dose independent rect. 9 23
311 206.87 temperature 30 30 > th dose dependent sin 7 NA
321 206.90 temperature 30 30 > th dose independent rect. 9 7
335 206.90 radiation 40 270 < th dose independent rect. 24 20
359 206.97 atmosphere 995 720 > th dose dependent rect. 6 1
390 207.03 wind 9 30 < th dose dependent rect. 23 19
394 207.06 wind 1 1440 > th dose independent rect. 9 1
395 207.06 temperature 30 90 > th dose independent rect. 8 3
412 207.06 wind 1 720 > th dose dependent rect. 21 16
413 207.06 wind 1 270 > th dose dependent rect. 1 19
417 207.07 radiation 1 14400 < th dose dependent rect. 24 3
435 207.10 temperature 30 270 < th dose dependent rect. 24 10
454 207.13 atmosphere 1010 720 < th dose independent sin 11 NA
457 207.13 wind 7 1440 < th dose dependent rect. 15 1
460 207.14 temperature 10 30 > th dose dependent sin 5 NA
471 207.16 wind 3 1440 < th dose dependent rect. 9 1
477 207.17 wind 3 1440 < th dose dependent rect. 9 4
485 207.19 atmosphere 1010 10 < th dose independent rect. 2 21
497 207.21 atmosphere 1010 720 < th dose independent rect. 18 14
511 207.22 radiation 40 270 < th dose independent rect. 24 11
516 207.22 atmosphere 1005 720 > th dose dependent rect. 23 3
527 207.24 radiation 20 270 > th dose independent rect. 7 1
533 207.26 temperature 25 90 < th dose independent rect. 1 10
538 207.27 radiation 1 720 < th dose independent rect. 18 9
539 207.27 wind 3 1440 < th dose independent rect. 1 12
542 207.27 wind 1 720 > th dose dependent sin 7 NA
543 207.27 wind 1 1440 > th dose dependent rect. 15 1
565 207.31 atmosphere 1010 720 < th dose independent rect. 18 11
569 207.31 atmosphere 1010 10 < th dose independent rect. 18 20
581 207.33 humidity 50 4320 > th dose independent rect. 24 10
586 207.34 atmosphere 1010 720 < th dose independent rect. 18 9
595 207.35 atmosphere 1015 720 < th dose dependent rect. 22 8
598 207.36 humidity 60 10 > th dose independent rect. 2 21
600 207.36 atmosphere 1010 270 < th dose dependent rect. 5 5
603 207.37 wind 5 30 < th dose independent rect. 23 10
607 207.37 wind 1 720 > th dose dependent rect. 1 12
620 207.39 atmosphere 995 720 > th dose dependent rect. 5 4
629 207.40 temperature 30 10 > th dose independent rect. 9 3
705 207.44 atmosphere 1015 720 < th dose dependent rect. 1 4
755 207.49 wind 3 720 > th dose dependent rect. 4 1
772 207.51 radiation 20 14400 < th dose dependent rect. 23 1
780 207.52 humidity 60 90 > th dose independent rect. 1 12
840 207.58 atmosphere 1010 270 < th dose dependent rect. 6 3
864 207.61 wind 5 720 > th dose independent rect. 4 5
891 207.63 atmosphere 995 270 > th dose dependent rect. 3 14
893 207.64 wind 3 720 > th dose independent rect. 8 5
905 207.65 radiation 20 30 < th dose independent rect. 8 12
920 207.66 atmosphere 995 720 > th dose dependent rect. 3 6
971 207.69 humidity 60 720 > th dose independent rect. 18 9
979 207.70 radiation 20 30 < th dose independent rect. 2 11
993 207.72 atmosphere 1010 720 > th dose independent rect. 22 5
996 207.72 humidity 60 720 > th dose independent rect. 1 12