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Os02g0792600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.65 (0.0319) R2 : 0.72
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.96 (0.0803) R2dC : 0.368 R2C : 0.312
β3 : 1.7 (0.0668) R2dE : 0.402 R2E : 0.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.146 (0.0673) R2dN8 : 0.00392 R2N8 : 0.00444
σ : 0.6
deviance : 166.04
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C
peak time of C : 3.21
E
wheather : temperature
threshold : 29.09
memory length : 274
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.12
open length of G : 10.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.71 0.577 7.67 -0.473 2.02 1.68 1.72 0.0622 -0.228 3.21 29.41 286 2.02 10.2
150.61 0.572 7.66 -0.477 2 1.66 1.65 -- -0.217 3.24 29.2 286 2.02 10.2
159.01 0.587 7.67 -0.477 2.01 1.7 -- -0.381 -0.224 3.16 29.34 279 2.03 10.3
159.8 0.589 7.67 -0.493 2.01 1.71 -- -- -0.222 3.16 29.35 278 2.02 10.3
283.9 0.785 7.64 -0.411 -- 1.84 -- 0.413 -0.216 -- 42.06 129 0.531 10.7
183.96 0.636 7.63 -0.59 2.76 -- 1.39 -- -0.299 6.04 -- -- -- --
188.66 0.643 7.63 -0.576 2.76 -- -- -- -0.303 6.09 -- -- -- --
279.41 0.779 7.74 -0.615 -- 1.83 -- -- -0.396 -- 81.19 182 0.183 10.6
166.04 0.6 7.65 -- 1.96 1.7 -- -- -0.146 3.21 29.09 274 2.12 10.4
584.36 1.13 7.68 -0.497 -- -- -- -- -0.241 -- -- -- -- --
197.41 0.657 7.62 -- 2.75 -- -- -- -0.239 6.1 -- -- -- --
285.17 0.787 7.68 -- -- 1.86 -- -- -0.276 -- 88.79 200 0.0167 10.5
590.88 1.13 7.67 -- -- -- -- -- -0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.21 temperature 10.0 270 > th dose dependent rect. 5 12
2 151.77 temperature 15.0 720 > th dose dependent rect. 6 3
3 151.87 temperature 10.0 720 > th dose dependent rect. 5 5
17 154.40 temperature 30.0 270 < th dose independent rect. 2 10
26 155.65 precipitation 0.1 270 < th dose independent rect. 2 10
27 155.65 precipitation 0.1 270 < th dose dependent rect. 2 10
30 155.81 temperature 25.0 270 < th dose independent rect. 8 3
33 156.14 temperature 30.0 270 < th dose dependent rect. 8 3
46 156.69 temperature 30.0 270 < th dose dependent rect. 7 5
60 157.28 wind 9.0 270 < th dose independent rect. 12 14
65 157.37 humidity 90.0 720 > th dose dependent rect. 19 5
86 158.24 temperature 10.0 270 > th dose independent rect. 2 10
87 158.24 atmosphere 995.0 270 > th dose independent rect. 2 10
88 158.24 atmosphere 1015.0 270 < th dose independent rect. 2 10
89 158.24 temperature 10.0 270 > th dose independent rect. 12 14
98 158.63 humidity 50.0 270 > th dose dependent rect. 21 11
102 158.79 temperature 10.0 270 > th dose dependent rect. 22 19
113 159.06 wind 9.0 270 < th dose independent rect. 2 10
118 159.11 temperature 30.0 270 < th dose dependent rect. 4 8
129 159.32 radiation 1.0 720 < th dose dependent rect. 14 3
135 159.53 humidity 60.0 14400 > th dose independent rect. 20 6
142 159.65 temperature 10.0 270 > th dose dependent sin 2 NA
144 159.70 temperature 30.0 720 < th dose dependent rect. 2 9
145 159.70 temperature 10.0 720 > th dose dependent rect. 23 11
149 159.75 temperature 10.0 720 > th dose dependent rect. 1 9
164 160.00 humidity 90.0 720 > th dose independent rect. 20 4
203 160.41 temperature 30.0 90 < th dose independent rect. 10 13
204 160.41 radiation 40.0 270 < th dose dependent rect. 17 19
213 160.49 humidity 60.0 14400 > th dose independent rect. 21 11
246 160.79 temperature 25.0 720 > th dose independent rect. 6 4
250 160.81 temperature 30.0 720 < th dose dependent rect. 2 3
257 160.90 humidity 50.0 270 > th dose independent rect. 2 10
259 160.91 humidity 50.0 90 > th dose dependent rect. 23 11
266 161.02 temperature 30.0 10 < th dose independent rect. 4 10
285 161.21 precipitation 0.1 270 < th dose independent rect. 8 13
287 161.21 precipitation 0.1 270 < th dose dependent rect. 8 13
300 161.34 temperature 30.0 90 < th dose independent rect. 17 21
308 161.45 radiation 1.0 720 < th dose independent rect. 11 15
310 161.46 temperature 30.0 10 < th dose independent rect. 18 20
329 161.65 radiation 1.0 720 < th dose independent rect. 13 5
332 161.68 radiation 40.0 270 < th dose independent rect. 17 21
334 161.70 humidity 70.0 270 > th dose independent rect. 21 11
339 161.73 precipitation 0.1 720 < th dose independent rect. 10 19
340 161.73 precipitation 0.1 720 < th dose dependent rect. 10 19
347 161.77 radiation 1.0 720 < th dose independent rect. 11 7
355 161.81 wind 7.0 720 < th dose independent rect. 17 13
385 161.99 wind 1.0 270 > th dose independent rect. 2 10
387 162.01 wind 7.0 720 < th dose independent rect. 17 5
398 162.06 radiation 1.0 720 < th dose dependent rect. 11 15
400 162.08 temperature 25.0 270 > th dose independent rect. 6 11
451 162.31 humidity 90.0 720 < th dose independent rect. 18 3
453 162.31 wind 1.0 270 > th dose independent rect. 12 14
491 162.45 radiation 1.0 1440 > th dose independent rect. 12 1
503 162.55 radiation 1.0 1440 < th dose independent rect. 10 1
506 162.55 radiation 1.0 1440 < th dose dependent rect. 10 1
511 162.58 atmosphere 995.0 270 > th dose independent rect. 12 14
522 162.65 radiation 30.0 270 < th dose independent rect. 21 11
525 162.69 precipitation 0.1 720 < th dose independent rect. 11 10
527 162.69 precipitation 0.1 720 < th dose dependent rect. 11 10
538 162.77 radiation 40.0 270 < th dose independent rect. 9 13
542 162.79 radiation 10.0 720 > th dose independent rect. 6 3
573 162.88 humidity 80.0 1440 < th dose independent rect. 11 3
583 162.92 temperature 30.0 10 < th dose independent rect. 11 12
613 163.03 radiation 1.0 30 > th dose independent rect. 5 9
625 163.04 temperature 30.0 10 < th dose independent rect. 11 14
627 163.05 humidity 80.0 1440 > th dose independent rect. 11 3
628 163.05 precipitation 0.1 720 < th dose independent rect. 18 3
629 163.05 precipitation 0.1 720 < th dose dependent rect. 18 3
657 163.16 radiation 10.0 1440 < th dose dependent rect. 13 1
670 163.21 atmosphere 1015.0 270 < th dose independent rect. 12 14
676 163.24 temperature 10.0 270 > th dose independent rect. 21 11
677 163.24 temperature 30.0 270 < th dose independent rect. 21 11
678 163.24 humidity 50.0 270 > th dose independent rect. 21 11
680 163.24 atmosphere 995.0 270 > th dose independent rect. 21 11
681 163.24 temperature 10.0 270 > th dose independent rect. 8 13
689 163.28 radiation 20.0 720 < th dose dependent rect. 24 9
699 163.32 radiation 1.0 1440 < th dose independent rect. 13 1
700 163.32 radiation 40.0 90 < th dose independent rect. 19 20
706 163.34 precipitation 0.1 270 < th dose independent rect. 12 14
708 163.34 precipitation 0.1 270 < th dose dependent rect. 12 14
714 163.38 precipitation 0.1 720 < th dose independent rect. 18 18
717 163.38 precipitation 0.1 720 < th dose dependent rect. 18 18
727 163.43 humidity 70.0 720 > th dose dependent rect. 14 10
736 163.46 temperature 30.0 10 < th dose independent rect. 11 3
741 163.47 humidity 90.0 720 > th dose independent rect. 12 13
767 163.56 temperature 25.0 270 > th dose independent rect. 24 17
787 163.63 precipitation 0.1 270 < th dose independent rect. 17 12
789 163.63 precipitation 0.1 270 < th dose dependent rect. 17 12
790 163.64 temperature 30.0 10 < th dose independent rect. 11 1
801 163.65 radiation 10.0 720 < th dose independent rect. 17 15
819 163.74 temperature 30.0 270 < th dose dependent sin 2 NA
829 163.78 humidity 90.0 720 > th dose dependent sin 18 NA
848 163.85 wind 9.0 270 < th dose independent rect. 21 11
874 163.96 radiation 1.0 1440 < th dose independent rect. 10 4
878 163.96 radiation 1.0 1440 < th dose dependent rect. 10 4
891 164.00 precipitation 0.1 720 < th dose independent rect. 18 9
892 164.00 precipitation 0.1 720 < th dose dependent rect. 18 9
903 164.03 temperature 30.0 270 < th dose independent rect. 2 21
905 164.05 radiation 1.0 1440 > th dose independent rect. 11 6
910 164.06 precipitation 0.1 720 < th dose independent rect. 17 5
913 164.06 precipitation 0.1 720 < th dose dependent rect. 17 5
934 164.11 humidity 90.0 720 < th dose independent rect. 17 6
939 164.11 radiation 40.0 270 < th dose dependent rect. 21 11
969 164.20 radiation 40.0 270 > th dose independent rect. 13 21
991 164.22 humidity 80.0 1440 > th dose independent rect. 13 1