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Os02g0792100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.24 (0.0232) R2 : 0.529
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.23 (0.0557) R2dC : 0.503 R2C : 0.494
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.252 (0.0488) R2dN8 : 0.0355 R2N8 : 0.0263
σ : 0.437
deviance : 87.35
__
_____
C
peak time of C : 22.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.4 0.4 9.2 0.309 1.09 0.788 0.251 -1.12 0.439 22.6 9.292 1507 -- --
74.25 0.401 9.2 0.277 1.1 0.844 0.0641 -- 0.434 22.6 7.426 1512 -- --
72.64 0.397 9.2 0.291 1.09 0.783 -- -1.05 0.44 22.6 9.537 1507 -- --
74.19 0.401 9.2 0.243 1.08 0.825 -- -- 0.415 22.5 7.654 1519 -- --
88.01 0.439 9.2 0.164 -- 0.968 -- -0.144 0.284 -- 9.537 1507 -- --
86.38 0.436 9.24 0.187 1.22 -- -0.0767 -- 0.273 22.7 -- -- -- --
86.4 0.435 9.24 0.19 1.22 -- -- -- 0.273 22.7 -- -- -- --
86.99 0.436 9.2 0.18 -- 0.963 -- -- 0.296 -- 7.654 1519 -- --
75.06 0.404 9.2 -- 1.07 0.81 -- -- 0.388 22.4 10 1551 -- --
179.03 0.625 9.2 0.214 -- -- -- -- 0.28 -- -- -- -- --
87.35 0.437 9.24 -- 1.23 -- -- -- 0.252 22.7 -- -- -- --
87.85 0.438 9.2 -- -- 0.965 -- -- 0.276 -- 7.654 1519 -- --
180.24 0.627 9.21 -- -- -- -- -- 0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.59 radiation 20 1440 < th dose dependent rect. 11 1
3 71.09 radiation 20 1440 < th dose independent rect. 11 2
4 71.39 humidity 80 4320 < th dose independent rect. 7 2
10 72.16 radiation 20 1440 < th dose independent rect. 11 22
11 72.16 radiation 10 1440 < th dose dependent rect. 6 10
15 72.31 radiation 10 1440 < th dose dependent rect. 2 14
20 72.35 radiation 10 1440 < th dose dependent rect. 22 18
21 72.35 radiation 10 1440 < th dose dependent rect. 20 20
27 72.38 radiation 20 1440 < th dose dependent rect. 11 22
29 72.43 radiation 10 1440 < th dose dependent sin 0 NA
32 72.50 wind 1 43200 > th dose independent rect. 13 11
37 72.54 wind 9 4320 > th dose independent rect. 17 1
40 72.55 radiation 20 1440 < th dose independent rect. 11 18
47 72.56 humidity 80 4320 > th dose independent rect. 7 2
48 72.56 radiation 20 1440 < th dose independent rect. 11 8
56 72.57 radiation 20 1440 < th dose independent rect. 11 16
60 72.59 wind 9 4320 > th dose independent rect. 17 4
69 72.68 radiation 10 1440 < th dose dependent rect. 8 7
76 72.81 wind 9 4320 < th dose independent rect. 17 4
104 72.86 wind 9 4320 < th dose independent rect. 17 2
126 72.93 wind 1 43200 < th dose independent rect. 13 11
137 72.97 radiation 10 1440 < th dose dependent rect. 8 23
151 73.01 wind 7 4320 > th dose dependent rect. 17 2
159 73.04 radiation 10 1440 < th dose dependent rect. 6 15
160 73.04 radiation 10 1440 < th dose dependent rect. 6 17
169 73.05 radiation 10 1440 < th dose dependent rect. 6 21
181 73.07 radiation 10 1440 < th dose dependent rect. 2 21
221 73.10 radiation 10 1440 < th dose dependent rect. 22 23
223 73.11 radiation 10 1440 < th dose dependent no NA NA
245 73.13 wind 9 4320 > th dose independent rect. 15 6
265 73.14 wind 9 4320 > th dose independent rect. 15 4
335 73.19 radiation 20 1440 < th dose independent rect. 15 23
368 73.30 radiation 1 1440 > th dose dependent rect. 11 2
372 73.32 radiation 20 1440 < th dose independent sin 22 NA
375 73.32 wind 7 4320 > th dose dependent rect. 15 6
384 73.34 radiation 20 1440 < th dose independent rect. 8 23
393 73.37 radiation 20 1440 < th dose independent rect. 2 19
394 73.37 radiation 20 1440 < th dose independent rect. 2 21
401 73.38 radiation 10 1440 > th dose independent rect. 11 2
402 73.38 radiation 20 1440 < th dose independent rect. 2 16
420 73.39 radiation 20 1440 < th dose independent no NA NA
422 73.39 radiation 20 1440 < th dose independent rect. 4 14
436 73.39 radiation 20 1440 < th dose independent rect. 22 20
445 73.39 radiation 20 1440 < th dose independent rect. 6 23
453 73.40 radiation 20 1440 < th dose independent rect. 6 12
468 73.40 radiation 20 1440 < th dose independent rect. 6 21
544 73.47 radiation 20 1440 < th dose independent rect. 8 21
547 73.48 radiation 20 1440 < th dose independent rect. 8 10
569 73.50 wind 9 4320 > th dose independent rect. 15 16
609 73.56 wind 9 4320 > th dose independent rect. 17 15
612 73.57 wind 9 43200 > th dose independent rect. 16 1
617 73.59 wind 9 4320 < th dose independent rect. 15 4
618 73.59 wind 9 4320 < th dose independent rect. 15 6
620 73.59 wind 1 43200 < th dose independent rect. 14 9
687 73.71 radiation 10 1440 > th dose independent rect. 6 8
688 73.71 radiation 20 1440 < th dose independent rect. 6 8
757 73.79 radiation 10 1440 > th dose independent rect. 8 6
816 73.84 radiation 1 1440 > th dose dependent rect. 11 22
829 73.87 radiation 20 1440 < th dose independent rect. 8 6
836 73.88 radiation 10 4320 > th dose independent rect. 6 2
926 73.92 radiation 1 14400 < th dose independent rect. 18 11
942 73.93 wind 7 4320 > th dose dependent rect. 15 15
973 73.95 wind 9 4320 < th dose independent rect. 15 10
986 73.96 radiation 20 1440 < th dose dependent rect. 11 10
987 73.96 radiation 20 1440 < th dose dependent rect. 11 12