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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0791700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.99 (0.0361) R2 : 0.247
β1 : 1.09 (0.132) R2dD : 0.117 R2D : 0.0612
β2 : 0.829 (0.127) R2dC : 0.134 R2C : -0.0849
β3 : -0.907 (0.119) R2dE : 0.189 R2E : -0.0413
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.368 (0.0784) R2dN8 : 0.0507 R2N8 : 0.04
σ : 0.674
deviance : 209.28
__
_____
C
peak time of C : 4.14
E
wheather : humidity
threshold : 75.93
memory length : 6
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.15 0.678 5 1.06 0.825 -0.936 -0.63 0.726 0.349 3.97 77 10 -- --
209.37 0.679 5 1.09 0.823 -0.904 -0.131 -- 0.366 4.09 76.2 10 -- --
208.77 0.673 4.99 1.09 0.822 -0.915 -- 0.43 0.359 4.22 77 10 -- --
209.28 0.674 4.99 1.09 0.829 -0.907 -- -- 0.368 4.14 75.93 6 -- --
227.76 0.703 4.99 1.08 -- -0.406 -- 0.459 0.427 -- 80.64 11 -- --
227.54 0.707 4.97 1.02 0.315 -- 1.11 -- 0.486 9.02 -- -- -- --
231.37 0.712 4.97 1.05 0.332 -- -- -- 0.485 7.98 -- -- -- --
228.51 0.704 4.99 1.09 -- -0.384 -- -- 0.442 -- 78 6 -- --
239.29 0.724 5.02 -- 0.875 -0.921 -- -- 0.26 3.98 72 5 -- --
237.4 0.72 4.98 1.06 -- -- -- -- 0.489 -- -- -- -- --
260.53 0.755 4.99 -- 0.34 -- -- -- 0.368 7.76 -- -- -- --
259.48 0.753 5.01 -- -- -0.339 -- -- 0.334 -- 75 4 -- --
266.76 0.762 5 -- -- -- -- -- 0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.10 radiation 1 1440 > th dose independent rect. 9 3
2 201.17 radiation 1 1440 > th dose independent rect. 8 5
4 201.61 humidity 80 10 > th dose dependent rect. 20 21
11 202.43 radiation 1 1440 < th dose independent rect. 9 2
12 202.43 radiation 1 1440 < th dose dependent rect. 9 2
13 202.55 radiation 1 1440 < th dose independent rect. 8 5
15 202.55 radiation 1 1440 < th dose dependent rect. 8 5
20 202.83 radiation 1 1440 < th dose independent rect. 8 7
21 202.83 radiation 1 1440 < th dose dependent rect. 8 7
30 203.25 humidity 80 10 > th dose dependent sin 3 NA
47 203.83 humidity 70 10 > th dose dependent rect. 2 14
56 204.00 humidity 80 10 > th dose dependent rect. 24 17
112 205.24 humidity 80 10 > th dose independent rect. 2 14
122 205.43 humidity 80 1440 > th dose independent rect. 11 3
123 205.44 humidity 90 10 < th dose independent rect. 21 14
135 205.59 radiation 1 1440 > th dose independent rect. 13 1
143 205.79 humidity 90 10 < th dose independent rect. 23 12
146 205.81 temperature 30 10 < th dose dependent rect. 2 14
155 205.90 humidity 90 10 < th dose independent sin 5 NA
156 205.95 radiation 1 720 < th dose dependent rect. 24 16
186 206.25 humidity 70 10 > th dose dependent rect. 18 22
190 206.31 humidity 80 1440 < th dose independent rect. 11 3
217 206.66 humidity 80 1440 > th dose dependent rect. 11 3
220 206.73 humidity 80 1440 > th dose independent rect. 9 5
246 206.92 humidity 80 1440 < th dose independent rect. 9 5
274 207.39 humidity 80 10 > th dose dependent rect. 24 23
295 207.58 humidity 90 10 < th dose independent rect. 19 16
307 207.71 humidity 90 30 > th dose independent sin 4 NA
316 207.81 humidity 80 1440 < th dose independent rect. 5 9
331 208.02 humidity 70 10 > th dose dependent rect. 10 23
339 208.07 humidity 80 1440 < th dose independent rect. 23 15
355 208.14 humidity 90 30 < th dose independent rect. 23 14
411 208.57 humidity 90 10 < th dose independent rect. 23 16
455 208.91 humidity 90 10 < th dose independent rect. 21 18
463 208.93 radiation 1 720 < th dose independent rect. 24 16
471 208.99 humidity 80 30 < th dose independent rect. 20 21
483 209.06 radiation 1 1440 < th dose dependent rect. 3 13
488 209.08 radiation 1 1440 < th dose dependent rect. 18 22
497 209.11 radiation 1 1440 < th dose dependent rect. 21 19
503 209.12 temperature 30 30 < th dose dependent rect. 2 17
513 209.14 humidity 90 10 < th dose dependent rect. 21 14
525 209.19 humidity 90 720 > th dose dependent rect. 20 7
536 209.21 humidity 90 720 > th dose dependent rect. 7 20
551 209.26 humidity 80 1440 > th dose independent rect. 4 11
556 209.28 humidity 90 90 < th dose dependent rect. 21 12
566 209.34 humidity 80 10 > th dose dependent no NA NA
571 209.36 humidity 80 10 > th dose independent rect. 2 21
574 209.37 humidity 80 10 > th dose dependent rect. 7 23
589 209.48 humidity 80 10 > th dose dependent rect. 15 23
596 209.52 humidity 90 270 < th dose dependent rect. 19 13
601 209.54 radiation 1 720 < th dose dependent rect. 24 19
608 209.58 humidity 90 10 < th dose dependent rect. 21 11
618 209.62 humidity 80 10 > th dose dependent rect. 13 23
629 209.65 radiation 1 1440 < th dose dependent rect. 8 22
635 209.68 humidity 80 1440 < th dose independent sin 3 NA
638 209.68 radiation 1 1440 > th dose independent rect. 8 22
651 209.73 radiation 1 1440 < th dose dependent sin 23 NA
655 209.74 radiation 1 1440 < th dose dependent rect. 8 14
656 209.74 radiation 1 1440 < th dose dependent rect. 8 16
682 209.82 humidity 80 1440 > th dose independent rect. 24 15
704 209.87 radiation 10 30 > th dose independent rect. 12 23
709 209.88 humidity 80 10 > th dose independent rect. 24 23
720 209.92 radiation 1 1440 < th dose independent rect. 8 22
737 210.00 humidity 90 720 < th dose independent rect. 23 1
772 210.07 humidity 90 10 < th dose independent rect. 5 10
793 210.12 radiation 1 1440 < th dose independent rect. 8 14
794 210.12 radiation 1 1440 < th dose independent rect. 8 16
813 210.17 radiation 1 1440 > th dose independent sin 23 NA
816 210.18 humidity 80 10 > th dose independent rect. 20 20
837 210.22 radiation 1 1440 < th dose independent sin 23 NA
878 210.33 humidity 90 10 < th dose dependent sin 9 NA
919 210.43 humidity 80 10 > th dose dependent rect. 20 13
979 210.57 radiation 1 720 < th dose dependent sin 3 NA