Os02g0788400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Eukaryotic translation initiation factor 3 subunit-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0788400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Eukaryotic translation initiation factor 3 subunit-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.91 | 0.289 | 13.1 | 0.361 | 0.53 | 0.324 | 0.424 | -5.79 | 0.0803 | 17.8 | 30 | 1215 | -- | -- |
| 39.86 | 0.294 | 12.9 | 1.28 | 0.508 | -0.303 | 0.404 | -- | 0.0928 | 17.9 | 30.7 | 2627 | -- | -- |
| 38.34 | 0.288 | 13.1 | 0.352 | 0.532 | 0.329 | -- | -5.87 | 0.0819 | 17.8 | 30.04 | 1205 | -- | -- |
| 40.08 | 0.295 | 12.9 | 1.34 | 0.541 | -0.361 | -- | -- | 0.088 | 17.8 | 31.17 | 2615 | -- | -- |
| 52.86 | 0.339 | 13.1 | 0.231 | -- | 0.359 | -- | -6.43 | 0.052 | -- | 30 | 1237 | -- | -- |
| 44.54 | 0.313 | 12.9 | 1.25 | 0.563 | -- | 0.498 | -- | 0.148 | 17.5 | -- | -- | -- | -- |
| 45.15 | 0.315 | 12.9 | 1.25 | 0.566 | -- | -- | -- | 0.15 | 17.5 | -- | -- | -- | -- |
| 55.04 | 0.346 | 12.9 | 1.34 | -- | -0.374 | -- | -- | 0.0897 | -- | 31.51 | 5579 | -- | -- |
| 85.19 | 0.43 | 13 | -- | 0.531 | -0.162 | -- | -- | -0.0172 | 17.7 | 31.22 | 1172 | -- | -- |
| 61.8 | 0.367 | 12.9 | 1.23 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 86.41 | 0.435 | 13 | -- | 0.545 | -- | -- | -- | 0.0107 | 17.6 | -- | -- | -- | -- |
| 77.78 | 0.411 | 13 | -- | -- | 0.789 | -- | -- | -0.237 | -- | 7.392 | 47520 | -- | -- |
| 101.87 | 0.471 | 13 | -- | -- | -- | -- | -- | -0.000463 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.95 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 3 | 38.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 5 |
| 5 | 38.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 10 | 38.05 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 37 | 38.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 38 | 38.14 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 45 | 38.16 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 92 | 38.30 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 121 | 38.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 139 | 38.38 | temperature | 25 | 4320 | > th | dose dependent | sin | 13 | NA |
| 146 | 38.39 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 152 | 38.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 160 | 38.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 192 | 38.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 292 | 38.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 368 | 38.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 378 | 38.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 399 | 38.66 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 19 | 8 |
| 400 | 38.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 411 | 38.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 429 | 38.68 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 513 | 38.69 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 528 | 38.70 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 551 | 38.72 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 553 | 38.72 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 763 | 38.76 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 785 | 38.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 806 | 38.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 809 | 38.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 866 | 38.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 963 | 38.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 4 |