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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0788300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Eukaryotic translation initiation factor 3 p42 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0474) R2 : 0.00971
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.211 (0.0999) R2dN8 : 0.0125 R2N8 : 0.00971
σ : 0.893
deviance : 366.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.78 0.857 3.08 -0.315 0.152 2.08 -0.216 -12.7 -0.151 23.4 65 15 6.35 --
345.19 0.872 3.05 -0.108 0.12 1.68 0.84 -- -0.173 4.21 55.99 4 6.6 --
332.94 0.85 3.08 -0.305 0.155 2.08 -- -12.5 -0.15 0.132 64.94 14 6.36 --
345.59 0.866 3.05 -0.113 0.158 1.64 -- -- -0.178 1.26 55.76 4 6.87 --
334.45 0.852 3.07 -0.298 -- 2.05 -- -12.4 -0.149 -- 64.87 14 6.35 --
364.51 0.895 3.06 -0.074 0.146 -- -0.41 -- -0.216 19.5 -- -- -- --
364.69 0.894 3.06 -0.0671 0.157 -- -- -- -0.218 21.2 -- -- -- --
347.07 0.868 3.05 -0.105 -- 1.61 -- -- -0.177 -- 55.73 4 6.6 --
345.92 0.866 3.05 -- 0.155 1.63 -- -- -0.166 1.21 55.89 4 6.85 --
366.12 0.894 3.06 -0.0665 -- -- -- -- -0.219 -- -- -- -- --
364.81 0.893 3.06 -- 0.157 -- -- -- -0.21 21.2 -- -- -- --
347.36 0.868 3.05 -- -- 1.6 -- -- -0.166 -- 55.5 4 6.58 --
366.24 0.893 3.06 -- -- -- -- -- -0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 329.39 humidity 70 10 < th dose dependent rect. 15 18
11 334.47 humidity 70 10 < th dose dependent sin 12 NA
14 334.62 humidity 70 10 < th dose dependent rect. 15 3
15 334.64 humidity 60 30 < th dose independent rect. 16 2
18 334.86 radiation 10 10 > th dose independent rect. 16 1
19 334.99 radiation 1 10 > th dose dependent rect. 15 17
23 335.21 humidity 70 10 < th dose independent rect. 15 18
53 337.35 humidity 60 10 < th dose independent rect. 14 4
56 337.67 wind 1 270 < th dose dependent rect. 2 1
70 337.90 radiation 10 10 > th dose independent rect. 15 17
132 339.20 radiation 30 30 > th dose independent rect. 15 18
202 340.43 radiation 10 10 > th dose dependent rect. 16 1
257 341.01 humidity 60 90 < th dose independent rect. 12 6
408 342.34 humidity 60 10 < th dose independent sin 13 NA
446 342.46 humidity 70 10 > th dose independent sin 12 NA
557 343.67 wind 1 90 < th dose dependent rect. 12 9
631 344.29 wind 1 90 < th dose dependent rect. 12 4
632 344.32 wind 1 90 < th dose dependent rect. 12 6
652 344.66 wind 1 270 < th dose independent rect. 2 1
737 345.22 atmosphere 1005 10 < th dose independent rect. 16 1
822 346.25 atmosphere 1005 90 < th dose independent rect. 11 6
838 346.31 radiation 30 10 < th dose dependent sin 12 NA
850 346.36 atmosphere 1005 10 < th dose independent rect. 12 6
860 346.54 humidity 90 30 > th dose independent rect. 13 3
864 346.54 humidity 90 30 > th dose dependent rect. 13 3
868 346.60 humidity 90 30 > th dose independent rect. 13 1
872 346.60 humidity 90 30 > th dose dependent rect. 13 1
946 346.85 wind 5 10 < th dose dependent rect. 16 1
980 346.98 temperature 30 4320 < th dose independent rect. 7 2