Os02g0787300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MAP kinase kinase.
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Os02g0787300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MAP kinase kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.52 | 0.636 | 8.14 | 1.3 | 1.55 | -2.52 | 1.1 | 0.355 | 0.393 | 18.1 | 20.62 | 10 | -- | -- |
| 183.6 | 0.631 | 8.15 | 1.24 | 1.54 | -2.49 | 1.15 | -- | 0.367 | 18.1 | 20.77 | 9 | -- | -- |
| 186.21 | 0.636 | 8.14 | 1.34 | 1.54 | -2.47 | -- | 0.734 | 0.402 | 18.2 | 20.8 | 10 | -- | -- |
| 186.68 | 0.636 | 8.15 | 1.21 | 1.53 | -2.42 | -- | -- | 0.364 | 18.3 | 20.77 | 9 | -- | -- |
| 295.73 | 0.805 | 8.14 | 1.11 | -- | -1.82 | -- | 0.416 | 0.245 | -- | 20.2 | 5 | -- | -- |
| 275.47 | 0.778 | 8.24 | 0.709 | 1.29 | -- | 0.17 | -- | -0.0491 | 20.7 | -- | -- | -- | -- |
| 275.57 | 0.777 | 8.24 | 0.704 | 1.29 | -- | -- | -- | -0.0493 | 20.7 | -- | -- | -- | -- |
| 295.85 | 0.801 | 8.15 | 1.04 | -- | -1.77 | -- | -- | 0.227 | -- | 20.2 | 3 | -- | -- |
| 222.18 | 0.698 | 8.19 | -- | 1.43 | -2.03 | -- | -- | 0.165 | 18.6 | 20.77 | 9 | -- | -- |
| 369.15 | 0.898 | 8.21 | 0.701 | -- | -- | -- | -- | -0.06 | -- | -- | -- | -- | -- |
| 288.62 | 0.795 | 8.26 | -- | 1.28 | -- | -- | -- | -0.128 | 20.7 | -- | -- | -- | -- |
| 323.29 | 0.84 | 8.18 | -- | -- | -1.57 | -- | -- | 0.0778 | -- | 20.4 | 3 | -- | -- |
| 382.11 | 0.912 | 8.23 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.67 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 2 | 184.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 3 | 185.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 186.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 7 | 186.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 14 | 188.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 188.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 18 | 189.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 21 | 189.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 24 | 189.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 27 | 190.28 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 30 | 190.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 31 | 190.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 33 | 190.74 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 34 | 190.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 38 | 190.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 47 | 191.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 59 | 192.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 61 | 192.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 71 | 192.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 76 | 193.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 81 | 193.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 92 | 194.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 97 | 194.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 111 | 194.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 151 | 196.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 185 | 198.62 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 189 | 198.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 194 | 199.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 200 | 199.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 213 | 199.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 219 | 199.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 224 | 199.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 245 | 200.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 268 | 200.15 | temperature | 25 | 720 | > th | dose dependent | sin | 20 | NA |
| 275 | 200.18 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 326 | 200.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 338 | 200.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 361 | 201.18 | temperature | 25 | 30 | > th | dose independent | rect. | 8 | 18 |
| 364 | 201.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 372 | 201.28 | temperature | 25 | 30 | > th | dose independent | rect. | 8 | 23 |
| 431 | 202.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 476 | 202.47 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 20 |
| 478 | 202.48 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 23 |
| 594 | 203.83 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 745 | 205.03 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 844 | 205.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 887 | 206.12 | temperature | 25 | 30 | < th | dose independent | sin | 19 | NA |
| 941 | 206.61 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 22 |
| 947 | 206.67 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 23 |
| 974 | 206.84 | temperature | 25 | 30 | < th | dose independent | rect. | 23 | 23 |
| 983 | 206.89 | temperature | 25 | 30 | > th | dose independent | no | NA | NA |
| 984 | 206.89 | temperature | 25 | 30 | > th | dose independent | rect. | 3 | 23 |
| 991 | 206.95 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 23 |
| 996 | 206.97 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 997 | 206.98 | temperature | 25 | 30 | < th | dose independent | no | NA | NA |
| 998 | 206.98 | temperature | 25 | 30 | < th | dose independent | rect. | 9 | 23 |