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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0786900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pathogenesis-related protein PR-1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.8 (0.0645) R2 : 0.837
β1 : -4.3 (0.242) R2dD : 0.126 R2D : 0.0628
β2 : 7.04 (0.166) R2dC : 0.662 R2C : 0.681
β3 : 2.47 (0.192) R2dE : 0.0634 R2E : 0.0594
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.02 (0.138) R2dN8 : 0.0263 R2N8 : -0.00742
σ : 1.2
deviance : 667.53
__
_____
C
peak time of C : 7.58
E
wheather : temperature
threshold : 25.79
memory length : 1257
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
653.26 1.2 6.91 -5.1 7.11 2.82 -2.09 -3.18 -1.3 7.59 25.36 1278 9.88 --
656.97 1.19 6.84 -4.32 7.12 2.46 -2.23 -- -1.22 7.59 25.61 1251 9.24 --
664.32 1.2 6.88 -5.09 7.1 2.87 -- -3.11 -1.19 7.61 25.72 1261 8.91 --
667.53 1.2 6.8 -4.3 7.04 2.47 -- -- -1.02 7.58 25.79 1257 8.9 --
747.45 1.27 7.16 -4.35 -- 9.22 -- -1.31 -1.64 -- 1.44 678 4.03 --
890.54 1.4 6.77 -3.59 7.33 -- -1.96 -- -0.935 7.36 -- -- -- --
901.02 1.41 6.77 -3.63 7.33 -- -- -- -0.931 7.37 -- -- -- --
726.3 1.26 7.06 -4.62 -- 9.35 -- -- -1.47 -- -36 1086 7.45 --
1131.53 1.57 6.65 -- 7.13 1.75 -- -- -0.396 7.56 26.48 1215 7.08 --
3759.41 2.87 6.94 -3.51 -- -- -- -- -0.81 -- -- -- -- --
1248.99 1.65 6.68 -- 7.3 -- -- -- -0.527 7.4 -- -- -- --
1209.24 1.62 6.93 -- -- 8.17 -- -- -0.76 -- -89.81 1048 7.21 --
4084.8 2.98 6.85 -- -- -- -- -- -0.421 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 635.03 humidity 70 14400 < th dose independent rect. 19 1
2 636.13 humidity 70 14400 < th dose independent rect. 19 12
3 639.68 humidity 70 14400 > th dose independent rect. 19 1
4 639.71 humidity 70 14400 > th dose independent rect. 19 12
15 641.09 humidity 70 14400 > th dose independent rect. 19 9
39 653.59 radiation 20 14400 > th dose dependent rect. 16 15
40 654.40 humidity 90 43200 > th dose dependent rect. 21 1
44 655.87 humidity 70 14400 < th dose dependent rect. 18 1
46 656.77 humidity 90 43200 < th dose independent rect. 20 1
53 658.86 wind 5 43200 > th dose independent rect. 11 1
54 659.18 radiation 1 4320 < th dose independent rect. 18 11
55 659.23 wind 5 43200 < th dose independent rect. 11 1
56 660.12 radiation 1 4320 > th dose independent rect. 18 11
58 660.63 humidity 90 43200 > th dose independent rect. 21 2
62 661.25 radiation 30 14400 < th dose independent rect. 15 17
65 661.34 radiation 20 14400 > th dose dependent rect. 16 1
86 662.31 radiation 10 14400 < th dose dependent rect. 18 11
87 662.38 temperature 25 1440 > th dose dependent rect. 13 6
89 662.47 radiation 40 14400 < th dose dependent rect. 18 10
98 662.86 radiation 1 4320 < th dose independent rect. 18 2
101 663.00 humidity 70 14400 < th dose dependent rect. 18 13
121 663.67 radiation 20 14400 < th dose independent rect. 16 15
153 664.23 radiation 10 14400 < th dose dependent rect. 18 2
165 664.62 humidity 70 14400 < th dose dependent rect. 18 4
178 664.73 radiation 1 4320 > th dose independent rect. 18 1
198 665.03 wind 5 43200 > th dose independent rect. 10 4
222 665.73 temperature 25 1440 > th dose dependent rect. 15 1
230 665.99 temperature 30 14400 > th dose independent rect. 14 1
236 666.10 radiation 30 14400 < th dose independent rect. 15 12
241 666.18 radiation 30 14400 < th dose independent rect. 15 3
251 666.26 radiation 30 14400 > th dose dependent rect. 15 17
252 666.27 radiation 30 14400 < th dose independent rect. 15 5
255 666.28 temperature 30 14400 < th dose independent rect. 14 1
271 666.67 temperature 30 14400 < th dose independent rect. 14 3
276 666.91 temperature 30 14400 > th dose independent rect. 14 3
285 667.22 atmosphere 1005 43200 > th dose independent rect. 16 1
301 667.57 temperature 25 1440 > th dose dependent sin 19 NA
342 668.27 temperature 30 14400 < th dose independent rect. 14 14
352 668.32 temperature 30 14400 < th dose independent rect. 14 17
368 668.49 wind 3 43200 < th dose dependent rect. 2 2
455 669.82 atmosphere 1005 43200 < th dose independent rect. 16 1
510 670.23 temperature 25 1440 > th dose dependent rect. 18 1
513 670.31 temperature 25 14400 > th dose dependent rect. 16 8
584 671.30 radiation 1 1440 < th dose dependent rect. 9 21
589 671.36 humidity 90 43200 > th dose independent rect. 9 2
604 671.48 temperature 30 14400 < th dose independent sin 15 NA
629 671.70 humidity 90 43200 < th dose independent rect. 10 1
652 671.89 temperature 25 14400 > th dose dependent rect. 17 2
662 672.00 temperature 25 14400 > th dose dependent sin 15 NA
665 672.02 temperature 25 1440 > th dose dependent rect. 2 19
669 672.05 temperature 30 14400 > th dose independent sin 15 NA
753 672.57 wind 3 43200 > th dose dependent rect. 11 1
777 672.83 wind 5 43200 > th dose independent rect. 5 10
801 672.97 humidity 80 43200 > th dose dependent rect. 10 1
818 673.20 wind 5 43200 < th dose independent rect. 5 10
869 673.56 radiation 20 14400 < th dose dependent rect. 17 13
882 673.68 wind 5 43200 > th dose independent rect. 7 8
981 674.60 temperature 25 1440 > th dose dependent no NA NA