Os02g0786500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.
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Os02g0786500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73 | 0.398 | -881 | 5410 | 0.308 | -259000 | -0.157 | 1580000 | 0.0338 | 4.58 | 995 | 10 | -- | -- |
| 71.56 | 0.397 | 3.15 | -0.00367 | 0.301 | 3 | -0.179 | -- | 0.032 | 4.51 | 994.7 | 4 | -- | -- |
| 73.07 | 0.398 | -881 | 5410 | 0.308 | -259000 | -- | 1580000 | 0.0346 | 4.63 | 995 | 10 | -- | -- |
| 71.55 | 0.394 | 3.15 | -0.00365 | 0.301 | 3.01 | -- | -- | 0.0321 | 4.57 | 994.8 | 4 | -- | -- |
| 78.06 | 0.411 | -881 | 5410 | -- | -259000 | -- | 1580000 | 0.0425 | -- | 995 | 10 | -- | -- |
| 80.44 | 0.42 | 3.15 | 0.0125 | 0.273 | -- | -0.268 | -- | 0.0257 | 4.49 | -- | -- | -- | -- |
| 80.63 | 0.421 | 3.15 | 0.0145 | 0.272 | -- | -- | -- | 0.0271 | 4.57 | -- | -- | -- | -- |
| 76.42 | 0.407 | 3.15 | 0.008 | -- | 2.86 | -- | -- | 0.0405 | -- | 994.8 | 6 | -- | -- |
| 71.55 | 0.394 | 3.15 | -- | 0.304 | 3.01 | -- | -- | 0.0338 | 4.57 | 994.8 | 4 | -- | -- |
| 84.57 | 0.43 | 3.15 | 0.025 | -- | -- | -- | -- | 0.0342 | -- | -- | -- | -- | -- |
| 80.64 | 0.42 | 3.15 | -- | 0.272 | -- | -- | -- | 0.0255 | 4.56 | -- | -- | -- | -- |
| 76.42 | 0.407 | 3.15 | -- | -- | 2.86 | -- | -- | 0.0399 | -- | 994.8 | 6 | -- | -- |
| 84.59 | 0.429 | 3.15 | -- | -- | -- | -- | -- | 0.0315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.14 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 3 | 71.37 | atmosphere | 995.0 | 90 | > th | dose independent | sin | 7 | NA |
| 5 | 71.44 | atmosphere | 995.0 | 10 | > th | dose independent | sin | 5 | NA |
| 7 | 71.47 | atmosphere | 995.0 | 90 | < th | dose independent | rect. | 18 | 21 |
| 9 | 71.50 | atmosphere | 995.0 | 90 | < th | dose dependent | rect. | 18 | 21 |
| 11 | 71.53 | atmosphere | 995.0 | 90 | < th | dose independent | sin | 6 | NA |
| 12 | 71.53 | atmosphere | 995.0 | 10 | < th | dose independent | rect. | 18 | 22 |
| 14 | 71.54 | atmosphere | 995.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 15 | 71.54 | atmosphere | 995.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 17 | 71.55 | atmosphere | 995.0 | 10 | < th | dose independent | sin | 5 | NA |
| 21 | 71.58 | atmosphere | 995.0 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 33 | 71.64 | atmosphere | 995.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 34 | 71.64 | atmosphere | 995.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 160 | 71.64 | atmosphere | 995.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 161 | 71.64 | atmosphere | 995.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 362 | 72.22 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 363 | 72.23 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 364 | 72.24 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 367 | 72.26 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 372 | 72.28 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 377 | 72.30 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 378 | 72.30 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 382 | 72.31 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 385 | 72.31 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 388 | 72.31 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 389 | 72.31 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 391 | 72.31 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 396 | 72.31 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 397 | 72.31 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 398 | 72.31 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 402 | 72.31 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 407 | 72.31 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 410 | 72.33 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 414 | 72.35 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 417 | 72.37 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 422 | 72.42 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 429 | 72.53 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 432 | 72.54 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 15 | 3 |
| 492 | 72.64 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 595 | 73.06 | atmosphere | 995.0 | 10 | < th | dose dependent | no | NA | NA |
| 812 | 73.15 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 813 | 73.15 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 832 | 73.54 | temperature | 30.0 | 30 | > th | dose dependent | sin | 12 | NA |
| 846 | 73.80 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 847 | 73.80 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 850 | 73.80 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 854 | 73.80 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 863 | 73.80 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 864 | 73.80 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 884 | 73.80 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 887 | 73.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 945 | 74.19 | wind | 1.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 946 | 74.19 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 952 | 74.25 | wind | 1.0 | 10 | > th | dose independent | sin | 8 | NA |
| 992 | 74.57 | wind | 1.0 | 10 | > th | dose independent | no | NA | NA |