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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0786300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Typical P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0146) R2 : 0.00111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0219 (0.0308) R2dN8 : 0.00143 R2N8 : 0.00111
σ : 0.276
deviance : 34.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.96 0.274 2.98 -0.024 0.101 0.134 -0.0849 -0.525 0.0276 11.7 39.99 272 -- --
34.17 0.272 2.98 -0.04 0.0995 0.186 -0.0078 -- 0.0231 11.4 49.91 220 -- --
33.98 0.272 2.98 -0.0226 0.099 0.131 -- -0.476 0.027 11.9 40 276 -- --
34.16 0.272 2.98 -0.038 0.0968 0.191 -- -- 0.0251 11.5 49.91 198 -- --
34.5 0.274 2.98 -0.0196 -- 0.0453 -- -0.448 0.0243 -- 39.63 339 -- --
34.53 0.275 2.98 -0.023 0.0696 -- 0.00754 -- 0.0195 10.5 -- -- -- --
34.53 0.275 2.98 -0.0227 0.0696 -- -- -- 0.0195 10.4 -- -- -- --
34.69 0.274 2.98 -0.0383 -- 0.142 -- -- 0.0137 -- 59.09 151 -- --
34.2 0.272 2.98 -- 0.0985 0.174 -- -- 0.0277 11.3 49.91 194 -- --
34.82 0.276 2.98 -0.0239 -- -- -- -- 0.0192 -- -- -- -- --
34.54 0.275 2.98 -- 0.0697 -- -- -- 0.022 10.4 -- -- -- --
34.7 0.275 2.98 -- -- 0.16 -- -- 0.0185 -- 59.24 85 -- --
34.84 0.276 2.98 -- -- -- -- -- 0.0219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.88 radiation 1.0 270 > th dose independent rect. 4 1
11 28.88 radiation 1.0 270 > th dose dependent rect. 4 1
21 30.51 atmosphere 1005.0 30 > th dose independent rect. 7 1
22 30.54 humidity 90.0 30 < th dose independent rect. 7 1
24 30.68 wind 3.0 10 < th dose independent rect. 7 1
27 31.55 temperature 20.0 30 > th dose independent rect. 7 1
29 31.65 atmosphere 1000.0 30 > th dose dependent rect. 7 1
30 31.68 wind 5.0 10 < th dose dependent rect. 7 1
31 31.75 humidity 80.0 10 > th dose independent rect. 8 1
33 31.76 radiation 30.0 30 < th dose independent rect. 7 1
43 31.81 radiation 1.0 30 > th dose independent rect. 7 1
49 31.87 temperature 25.0 90 < th dose independent rect. 7 1
53 31.93 temperature 15.0 30 > th dose dependent rect. 7 1
54 31.95 wind 1.0 30 > th dose independent rect. 7 1
55 31.95 temperature 25.0 10 < th dose independent rect. 7 1
69 32.00 radiation 10.0 10 > th dose independent rect. 17 15
83 32.01 atmosphere 995.0 30 > th dose independent rect. 8 23
93 32.07 wind 9.0 1440 < th dose independent rect. 8 1
96 32.07 temperature 10.0 1440 > th dose independent rect. 8 1
101 32.07 humidity 50.0 1440 > th dose independent rect. 8 1
103 32.07 atmosphere 995.0 1440 > th dose independent rect. 8 1
106 32.07 atmosphere 1015.0 1440 < th dose independent rect. 8 1
107 32.07 temperature 10.0 1440 > th dose independent rect. 9 23
112 32.08 temperature 10.0 30 > th dose independent rect. 7 1
115 32.08 humidity 50.0 30 > th dose independent rect. 7 1
117 32.08 atmosphere 995.0 30 > th dose independent rect. 7 1
118 32.08 atmosphere 1015.0 30 < th dose independent rect. 7 1
119 32.08 precipitation 0.1 30 < th dose independent rect. 7 1
120 32.08 temperature 10.0 30 > th dose independent rect. 8 23
121 32.08 precipitation 0.1 30 < th dose dependent rect. 7 1
124 32.10 precipitation 0.1 1440 < th dose independent rect. 8 1
125 32.10 precipitation 0.1 30 < th dose independent rect. 8 23
126 32.10 precipitation 0.1 1440 < th dose dependent rect. 8 1
127 32.10 precipitation 0.1 30 < th dose dependent rect. 8 23
145 32.15 humidity 50.0 30 > th dose independent rect. 8 23
151 32.21 temperature 30.0 30 < th dose independent rect. 8 23
152 32.22 humidity 90.0 90 < th dose independent rect. 3 5
157 32.29 wind 1.0 270 < th dose independent rect. 5 2
159 32.29 wind 9.0 30 < th dose independent rect. 8 23
160 32.30 radiation 40.0 30 < th dose dependent rect. 7 1
198 32.54 temperature 30.0 30 < th dose dependent rect. 7 1
202 32.56 humidity 50.0 30 > th dose dependent rect. 7 1
240 32.69 atmosphere 1015.0 30 < th dose dependent rect. 7 1
249 32.75 radiation 1.0 10 > th dose dependent rect. 7 1
255 32.80 humidity 80.0 720 < th dose independent rect. 23 3
257 32.81 humidity 80.0 720 < th dose dependent rect. 23 3
261 32.83 radiation 1.0 30 > th dose independent rect. 8 23
263 32.84 temperature 20.0 270 < th dose independent rect. 4 1
282 32.91 atmosphere 1015.0 30 < th dose independent rect. 8 23
283 32.92 humidity 80.0 720 < th dose independent rect. 23 1
289 32.94 humidity 80.0 720 < th dose dependent rect. 23 1
296 32.96 radiation 1.0 90 > th dose dependent rect. 6 2
330 33.04 humidity 90.0 10 < th dose independent rect. 7 16
332 33.04 wind 1.0 30 > th dose independent rect. 8 23
342 33.07 atmosphere 1010.0 30 < th dose independent rect. 7 16
351 33.09 temperature 30.0 30 < th dose independent rect. 8 10
367 33.10 humidity 80.0 720 > th dose independent rect. 22 7
373 33.11 atmosphere 1000.0 90 > th dose independent rect. 8 11
378 33.12 wind 7.0 90 < th dose independent rect. 19 13
390 33.13 wind 1.0 90 > th dose independent rect. 8 11
392 33.13 radiation 30.0 90 < th dose independent rect. 19 13
398 33.13 temperature 10.0 10 > th dose dependent rect. 7 16
406 33.14 precipitation 0.1 90 < th dose independent rect. 8 11
409 33.14 humidity 80.0 720 < th dose dependent rect. 22 5
412 33.14 precipitation 0.1 90 < th dose dependent rect. 8 11
414 33.15 temperature 10.0 1440 > th dose independent rect. 9 10
418 33.15 temperature 10.0 1440 > th dose independent rect. 19 14
421 33.15 humidity 50.0 1440 > th dose independent rect. 19 14
423 33.15 atmosphere 995.0 1440 > th dose independent rect. 19 14
426 33.15 wind 1.0 270 < th dose dependent rect. 5 2
433 33.16 temperature 10.0 90 > th dose independent rect. 8 11
434 33.16 humidity 50.0 90 > th dose independent rect. 8 11
435 33.16 atmosphere 1015.0 90 < th dose independent rect. 8 11
436 33.16 temperature 10.0 90 > th dose independent rect. 19 13
437 33.16 temperature 30.0 90 < th dose independent rect. 19 13
438 33.16 humidity 50.0 90 > th dose independent rect. 19 13
440 33.16 atmosphere 995.0 90 > th dose independent rect. 19 13
441 33.16 precipitation 0.1 90 < th dose independent rect. 19 13
442 33.16 wind 1.0 30 > th dose independent rect. 7 16
445 33.16 precipitation 0.1 90 < th dose dependent rect. 19 13
454 33.18 temperature 20.0 30 > th dose independent rect. 7 16
476 33.20 radiation 20.0 10 < th dose independent sin 11 NA
502 33.22 wind 9.0 10 < th dose independent rect. 7 16
564 33.24 precipitation 0.1 30 < th dose independent rect. 7 16
566 33.24 precipitation 0.1 720 < th dose independent rect. 9 23
574 33.24 precipitation 0.1 30 < th dose dependent rect. 7 16
575 33.24 precipitation 0.1 720 < th dose dependent rect. 9 23
595 33.26 atmosphere 1000.0 30 > th dose independent rect. 23 8
596 33.26 wind 1.0 30 > th dose dependent rect. 7 1
610 33.27 wind 9.0 30 < th dose independent rect. 23 8
611 33.27 temperature 10.0 30 > th dose independent rect. 23 8
612 33.27 temperature 10.0 1440 > th dose independent rect. 24 8
615 33.27 temperature 30.0 30 < th dose independent rect. 23 8
616 33.27 temperature 30.0 1440 < th dose independent rect. 24 8
620 33.27 humidity 50.0 30 > th dose independent rect. 23 8
623 33.27 humidity 50.0 1440 > th dose independent rect. 24 8
630 33.27 atmosphere 995.0 1440 > th dose independent rect. 24 8
631 33.27 radiation 20.0 30 < th dose independent rect. 23 8
634 33.27 precipitation 0.1 30 < th dose independent rect. 23 8
639 33.27 temperature 10.0 30 > th dose independent rect. 7 16
641 33.27 temperature 10.0 1440 > th dose independent rect. 8 16
652 33.27 precipitation 0.1 30 < th dose dependent rect. 23 8
680 33.29 humidity 80.0 720 < th dose independent rect. 22 5
714 33.30 radiation 40.0 30 < th dose dependent rect. 23 8
716 33.31 humidity 80.0 720 > th dose independent rect. 23 1
734 33.31 atmosphere 1010.0 30 < th dose independent rect. 7 14
736 33.31 humidity 50.0 10 > th dose independent rect. 7 16
737 33.31 humidity 90.0 30 < th dose independent rect. 3 20
748 33.32 wind 1.0 90 > th dose independent rect. 18 14
749 33.32 humidity 90.0 30 < th dose independent rect. 7 14
757 33.33 wind 9.0 90 < th dose independent rect. 8 11
766 33.33 wind 9.0 90 < th dose dependent rect. 18 14
768 33.34 humidity 80.0 720 > th dose independent rect. 22 4
783 33.34 temperature 10.0 10 > th dose dependent rect. 23 8
809 33.35 radiation 40.0 30 < th dose independent rect. 7 16
812 33.35 wind 1.0 720 > th dose dependent rect. 20 1
813 33.35 humidity 90.0 30 < th dose dependent rect. 7 1
828 33.36 temperature 20.0 30 > th dose independent rect. 7 14
833 33.36 atmosphere 995.0 720 > th dose independent rect. 21 23
838 33.37 precipitation 0.1 720 < th dose independent rect. 20 1
846 33.37 radiation 10.0 90 < th dose independent rect. 21 10
848 33.37 wind 1.0 30 > th dose independent rect. 7 14
860 33.37 precipitation 0.1 720 < th dose dependent rect. 20 1
864 33.37 humidity 50.0 30 > th dose dependent rect. 23 8
868 33.38 wind 1.0 720 > th dose independent rect. 20 1
880 33.38 atmosphere 995.0 30 > th dose dependent rect. 8 23
881 33.39 wind 9.0 720 < th dose independent rect. 20 1
882 33.39 temperature 10.0 720 > th dose independent rect. 20 1
883 33.39 temperature 30.0 720 < th dose independent rect. 20 1
884 33.39 humidity 50.0 720 > th dose independent rect. 20 1
887 33.39 atmosphere 995.0 720 > th dose independent rect. 20 1
888 33.39 radiation 1.0 720 < th dose independent rect. 20 1
901 33.39 wind 9.0 10 < th dose independent rect. 7 14
905 33.39 temperature 10.0 720 > th dose independent rect. 21 23
907 33.39 radiation 1.0 720 < th dose dependent rect. 20 1
913 33.39 humidity 90.0 90 < th dose dependent rect. 2 6
916 33.40 humidity 90.0 720 < th dose independent rect. 2 1
923 33.40 radiation 1.0 90 > th dose independent rect. 8 10
938 33.40 atmosphere 995.0 30 > th dose independent rect. 7 16
964 33.41 radiation 30.0 720 < th dose independent rect. 1 7
966 33.41 temperature 10.0 1440 > th dose independent rect. 22 10
969 33.41 temperature 30.0 1440 < th dose independent rect. 22 10
973 33.41 humidity 50.0 1440 > th dose independent rect. 22 10
978 33.41 atmosphere 995.0 1440 > th dose independent rect. 22 10
990 33.41 temperature 10.0 1440 > th dose independent rect. 8 14
993 33.41 precipitation 0.1 30 < th dose independent rect. 7 14
1000 33.41 precipitation 0.1 30 < th dose dependent rect. 7 14