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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0785600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0238) R2 : 0.000945
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.033 (0.0502) R2dN8 : 0.00122 R2N8 : 0.000945
σ : 0.449
deviance : 92.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.89 0.435 3.12 0.0341 0.185 1.45 -0.401 6.35 0.00349 9.42 6.975 1180 -- --
89.13 0.443 3.06 -0.141 0.17 -0.177 -0.495 -- 0.0108 9.64 6.975 1180 -- --
86.12 0.432 3.12 0.0047 0.206 1.55 -- 6.66 0.0025 9.6 6.813 965 -- --
89.39 0.44 3.06 -0.039 0.195 0.338 -- -- 0.00716 9.79 0.8123 1248 -- --
88.26 0.438 3.12 -0.016 -- 1.48 -- 6.85 -0.00246 -- 7.076 965 -- --
89.32 0.443 3.06 -0.122 0.17 -- -0.5 -- 0.0172 9.33 -- -- -- --
90.21 0.445 3.06 -0.139 0.171 -- -- -- 0.017 9.58 -- -- -- --
91.34 0.445 3.07 -0.0771 -- 0.267 -- -- 0.00661 -- 0.303 1428 -- --
89.4 0.44 3.06 -- 0.189 0.366 -- -- 0.00973 9.65 0.000988 1428 -- --
91.94 0.448 3.06 -0.141 -- -- -- -- 0.0174 -- -- -- -- --
90.72 0.446 3.06 -- 0.171 -- -- -- 0.0325 9.64 -- -- -- --
91.48 0.445 3.07 -- -- 0.315 -- -- 0.0123 -- -2.427 1428 -- --
92.46 0.449 3.06 -- -- -- -- -- 0.033 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.38 wind 9.0 720 > th dose dependent rect. 12 1
3 82.57 wind 9.0 720 > th dose independent rect. 12 1
13 83.48 wind 9.0 720 > th dose independent rect. 12 4
27 84.16 radiation 1.0 14400 < th dose dependent rect. 3 1
29 84.23 radiation 10.0 90 < th dose dependent rect. 9 3
31 84.27 temperature 20.0 30 > th dose dependent rect. 2 1
35 84.33 temperature 20.0 30 > th dose independent rect. 2 1
36 84.34 atmosphere 1005.0 30 > th dose independent rect. 2 1
37 84.34 atmosphere 1005.0 30 > th dose dependent rect. 2 1
40 84.36 wind 3.0 30 < th dose dependent rect. 2 1
42 84.37 wind 3.0 30 < th dose independent rect. 2 1
48 84.40 humidity 80.0 30 > th dose independent rect. 2 1
53 84.42 wind 9.0 1440 < th dose independent rect. 13 1
54 84.42 temperature 10.0 30 > th dose independent rect. 2 1
56 84.42 temperature 30.0 30 < th dose independent rect. 2 1
57 84.42 humidity 50.0 30 > th dose independent rect. 2 1
61 84.42 atmosphere 1010.0 30 < th dose independent rect. 2 1
63 84.42 radiation 1.0 30 < th dose independent rect. 2 1
68 84.42 precipitation 0.1 30 < th dose independent rect. 2 1
69 84.42 temperature 10.0 30 > th dose independent rect. 3 23
70 84.42 humidity 50.0 30 > th dose dependent rect. 2 1
73 84.42 radiation 1.0 30 < th dose dependent rect. 2 1
78 84.42 precipitation 0.1 30 < th dose dependent rect. 2 1
80 84.44 radiation 10.0 90 < th dose independent rect. 9 2
89 84.57 wind 9.0 1440 < th dose independent rect. 19 21
90 84.57 atmosphere 1015.0 30 < th dose dependent rect. 2 1
101 84.70 temperature 30.0 30 < th dose dependent rect. 2 1
108 84.79 wind 1.0 30 > th dose independent rect. 2 1
111 84.80 radiation 30.0 43200 < th dose dependent rect. 21 1
113 84.80 wind 7.0 1440 > th dose dependent rect. 19 19
114 84.81 temperature 10.0 1440 > th dose independent rect. 21 1
117 84.81 temperature 30.0 1440 < th dose independent rect. 21 1
121 84.81 humidity 50.0 1440 > th dose independent rect. 21 1
127 84.81 atmosphere 995.0 1440 > th dose independent rect. 21 1
128 84.81 radiation 1.0 1440 < th dose independent rect. 21 1
149 84.81 temperature 10.0 1440 > th dose independent rect. 22 23
152 84.81 radiation 30.0 4320 < th dose dependent rect. 21 1
157 84.82 wind 9.0 1440 > th dose independent rect. 20 20
165 84.83 atmosphere 1000.0 90 < th dose dependent rect. 10 1
172 84.85 wind 9.0 30 < th dose independent rect. 21 23
174 84.86 atmosphere 1005.0 30 > th dose dependent rect. 20 1
176 84.87 temperature 25.0 30 > th dose independent rect. 20 1
179 84.88 humidity 80.0 30 > th dose independent rect. 20 1
180 84.88 radiation 1.0 90 > th dose independent rect. 4 1
191 84.88 radiation 1.0 90 > th dose dependent rect. 4 1
201 84.89 wind 3.0 30 > th dose independent rect. 20 1
202 84.89 atmosphere 1005.0 30 > th dose independent rect. 20 1
209 84.90 humidity 90.0 30 < th dose independent rect. 20 1
210 84.90 wind 1.0 10 < th dose dependent rect. 6 1
211 84.90 temperature 20.0 30 > th dose dependent rect. 20 1
217 84.91 wind 9.0 1440 < th dose independent rect. 21 1
223 84.92 temperature 10.0 30 > th dose dependent rect. 20 1
227 84.93 wind 5.0 30 < th dose independent rect. 20 1
233 84.93 wind 1.0 30 > th dose dependent rect. 20 1
241 84.94 temperature 10.0 30 > th dose independent rect. 20 1
244 84.94 temperature 30.0 30 < th dose independent rect. 20 1
245 84.94 humidity 50.0 30 > th dose independent rect. 20 1
249 84.94 atmosphere 1010.0 30 < th dose independent rect. 20 1
251 84.94 radiation 1.0 30 < th dose independent rect. 20 1
256 84.94 precipitation 0.1 30 < th dose independent rect. 20 1
257 84.94 temperature 10.0 30 > th dose independent rect. 21 23
258 84.94 humidity 50.0 30 > th dose dependent rect. 20 1
260 84.94 radiation 1.0 30 < th dose dependent rect. 20 1
265 84.94 precipitation 0.1 30 < th dose dependent rect. 20 1
268 84.95 wind 9.0 30 < th dose dependent rect. 20 1
270 84.96 wind 9.0 1440 > th dose independent rect. 20 18
282 85.02 wind 1.0 10 > th dose independent rect. 21 23
286 85.03 humidity 90.0 30 < th dose dependent rect. 20 1
294 85.06 temperature 30.0 30 < th dose dependent rect. 20 1
295 85.06 atmosphere 1015.0 30 < th dose dependent rect. 20 1
300 85.09 wind 9.0 1440 < th dose independent rect. 11 5
316 85.13 wind 9.0 1440 < th dose independent rect. 3 1
317 85.13 temperature 10.0 1440 > th dose independent rect. 3 1
320 85.13 temperature 30.0 1440 < th dose independent rect. 3 1
324 85.13 humidity 50.0 1440 > th dose independent rect. 3 1
333 85.13 atmosphere 995.0 1440 > th dose independent rect. 3 1
334 85.13 radiation 1.0 1440 < th dose independent rect. 3 1
354 85.13 temperature 10.0 1440 > th dose independent rect. 4 23
360 85.13 radiation 1.0 1440 < th dose dependent rect. 3 1
413 85.23 wind 9.0 1440 < th dose independent rect. 4 10
426 85.28 wind 9.0 720 > th dose independent rect. 15 1
469 85.35 wind 9.0 1440 < th dose independent rect. 23 15
470 85.35 wind 9.0 1440 < th dose independent rect. 23 17
478 85.38 wind 7.0 720 > th dose dependent rect. 15 1
509 85.47 wind 1.0 30 < th dose independent rect. 11 1
531 85.53 precipitation 0.1 4320 < th dose independent rect. 9 1
534 85.53 precipitation 0.1 4320 < th dose dependent rect. 9 1
558 85.59 wind 7.0 1440 > th dose dependent rect. 15 23
571 85.63 wind 7.0 1440 > th dose independent rect. 15 23
575 85.64 wind 7.0 270 > th dose dependent rect. 19 1
577 85.65 atmosphere 995.0 30 > th dose independent rect. 3 23
603 85.70 wind 7.0 1440 < th dose independent rect. 15 23
607 85.71 radiation 1.0 1440 < th dose independent rect. 18 11
639 85.79 radiation 1.0 1440 > th dose independent rect. 18 11
642 85.81 precipitation 0.1 4320 > th dose independent rect. 9 1
646 85.81 precipitation 0.1 4320 > th dose dependent rect. 9 1
647 85.82 precipitation 0.1 30 < th dose independent rect. 3 23
651 85.82 precipitation 0.1 30 < th dose dependent rect. 3 23
667 85.84 wind 9.0 1440 < th dose independent sin 3 NA
675 85.84 wind 7.0 1440 > th dose dependent rect. 24 14
690 85.88 temperature 20.0 270 < th dose independent rect. 9 1
713 85.91 radiation 1.0 1440 < th dose independent rect. 18 9
719 85.92 radiation 1.0 1440 < th dose independent rect. 18 2
726 85.93 wind 3.0 10 > th dose independent rect. 20 4
737 85.93 wind 7.0 1440 < th dose independent rect. 10 15
741 85.93 radiation 1.0 1440 < th dose dependent rect. 18 11
746 85.94 wind 7.0 1440 > th dose independent rect. 10 15
753 85.95 wind 7.0 1440 < th dose independent rect. 10 22
771 85.96 wind 7.0 1440 < th dose independent rect. 10 20
807 85.98 wind 7.0 1440 < th dose independent rect. 10 12
812 85.98 atmosphere 995.0 30 > th dose independent rect. 21 23
815 85.99 radiation 1.0 1440 > th dose independent rect. 18 1
829 85.99 wind 9.0 1440 < th dose independent rect. 4 17
836 85.99 precipitation 0.1 30 < th dose independent rect. 21 23
840 85.99 precipitation 0.1 30 < th dose dependent rect. 21 23
841 86.00 wind 1.0 10 < th dose independent rect. 6 1
846 86.00 wind 7.0 1440 > th dose independent rect. 10 12
863 86.01 wind 7.0 1440 < th dose independent rect. 24 22
879 86.02 wind 7.0 1440 > th dose dependent rect. 10 15
887 86.03 wind 7.0 1440 < th dose independent rect. 6 19
942 86.05 wind 7.0 1440 > th dose independent rect. 24 22
954 86.05 wind 7.0 1440 > th dose dependent rect. 10 12
956 86.06 wind 7.0 1440 < th dose independent no NA NA
981 86.06 wind 7.0 1440 > th dose dependent rect. 19 1